RNA–Protein interactions for RNA: ENST00000513997.1

DDX60-205, Transcript of DExD/H-box helicase 60, human

TSL 3

Gene DDX60, Length 542 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX60-205	ENST00000513997	SHROOM4	Q9ULL8	1493 aa		13.85	□□□□□ -0.19
DDX60-205	ENST00000513997	TBC1D12	O60347	775 aa		13.83	□□□□□ -0.2
DDX60-205	ENST00000513997	IGSF3	O75054	1194 aa		13.82	□□□□□ -0.2
DDX60-205	ENST00000513997	AEBP1	Q8IUX7	1158 aa		13.81	□□□□□ -0.2
DDX60-205	ENST00000513997	EVI5	O60447	810 aa		13.8	□□□□□ -0.2
DDX60-205	ENST00000513997	HOXB3	P14651	431 aa	Predicted RBP	13.8	□□□□□ -0.2
DDX60-205	ENST00000513997	OTUD5	Q96G74	571 aa		13.8	□□□□□ -0.2
DDX60-205	ENST00000513997	MTMR7	Q9Y216	660 aa		13.79	□□□□□ -0.2
DDX60-205	ENST00000513997	PCDHGA4	Q9Y5G9	962 aa		13.79	□□□□□ -0.2
DDX60-205	ENST00000513997	TMCO4	Q5TGY1	634 aa		13.78	□□□□□ -0.2
DDX60-205	ENST00000513997	PTGER2	P43116	358 aa		13.77	□□□□□ -0.21
DDX60-205	ENST00000513997	LHX8	Q68G74	356 aa		13.77	□□□□□ -0.21
DDX60-205	ENST00000513997	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.77	□□□□□ -0.21
DDX60-205	ENST00000513997	DOK7	Q18PE1	504 aa		13.76	□□□□□ -0.21
DDX60-205	ENST00000513997	GOPC	Q9HD26	462 aa		13.75	□□□□□ -0.21
DDX60-205	ENST00000513997	KDM4F	A0A1W2PPD8	638 aa		13.73	□□□□□ -0.21
DDX60-205	ENST00000513997	GRXCR2	A6NFK2	248 aa		13.73	□□□□□ -0.21
DDX60-205	ENST00000513997	MFAP1	P55081	439 aa	Known RBP	13.71	□□□□□ -0.21
DDX60-205	ENST00000513997	DDX12P	Q92771	950 aa		13.71	□□□□□ -0.21
DDX60-205	ENST00000513997	SERPINA10	Q9UK55	444 aa		13.71	□□□□□ -0.21
DDX60-205	ENST00000513997	ZSWIM6	Q9HCJ5	1215 aa		13.7	□□□□□ -0.22
DDX60-205	ENST00000513997	RIMBP2	O15034	1052 aa		13.69	□□□□□ -0.22
DDX60-205	ENST00000513997	OSBP	P22059	807 aa		13.69	□□□□□ -0.22
DDX60-205	ENST00000513997	ARSI	Q5FYB1	569 aa		13.69	□□□□□ -0.22
DDX60-205	ENST00000513997	GPR153	Q6NV75	609 aa		13.69	□□□□□ -0.22
DDX60-205	ENST00000513997	CCDC97	Q96F63	343 aa	Predicted RBP	13.69	□□□□□ -0.22
DDX60-205	ENST00000513997	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.69	□□□□□ -0.22
DDX60-205	ENST00000513997	GZF1	Q9H116	711 aa	Predicted RBP	13.68	□□□□□ -0.22
DDX60-205	ENST00000513997	SNPH	O15079	494 aa		13.67	□□□□□ -0.22
DDX60-205	ENST00000513997	KHSRP	Q92945	711 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
DDX60-205	ENST00000513997	RBM25	P49756	843 aa	Known RBP	13.66	□□□□□ -0.22
DDX60-205	ENST00000513997	MCM6	Q14566	821 aa		13.66	□□□□□ -0.22
DDX60-205	ENST00000513997	ZNF710	Q8N1W2	664 aa		13.66	□□□□□ -0.22
DDX60-205	ENST00000513997	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.65	□□□□□ -0.22
DDX60-205	ENST00000513997	PROSER2	Q86WR7	435 aa	Predicted RBP	13.65	□□□□□ -0.22
DDX60-205	ENST00000513997	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.65	□□□□□ -0.22
DDX60-205	ENST00000513997	NUDT7	P0C024	238 aa		13.64	□□□□□ -0.23
DDX60-205	ENST00000513997	AMHR2	Q16671	573 aa		13.64	□□□□□ -0.23
DDX60-205	ENST00000513997	PARP9	Q8IXQ6	854 aa		13.64	□□□□□ -0.23
DDX60-205	ENST00000513997	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.64	□□□□□ -0.23
DDX60-205	ENST00000513997	GPR37	O15354	613 aa		13.63	□□□□□ -0.23
DDX60-205	ENST00000513997	RETREG2	Q8NC44	543 aa		13.63	□□□□□ -0.23
DDX60-205	ENST00000513997	ZNF428	Q96B54	188 aa		13.63	□□□□□ -0.23
DDX60-205	ENST00000513997	PHF14	O94880	888 aa		13.62	□□□□□ -0.23
DDX60-205	ENST00000513997	PRIM1	P49642	420 aa	Known RBP	13.62	□□□□□ -0.23
DDX60-205	ENST00000513997	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX60-205	ENST00000513997	PCDHGA10	Q9Y5H3	936 aa		13.6	□□□□□ -0.23
DDX60-205	ENST00000513997	CCDC102A	Q96A19	550 aa		13.59	□□□□□ -0.23
DDX60-205	ENST00000513997	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.59	□□□□□ -0.23
DDX60-205	ENST00000513997	EPAS1	Q99814	870 aa		13.58	□□□□□ -0.24
DDX60-205	ENST00000513997	HOXB1	P14653	301 aa	Predicted RBP	13.57	□□□□□ -0.24
DDX60-205	ENST00000513997	IRF5	Q13568	498 aa		13.57	□□□□□ -0.24
DDX60-205	ENST00000513997	JPH4	Q96JJ6	628 aa		13.57	□□□□□ -0.24
DDX60-205	ENST00000513997	HMGB1	P09429	215 aa	Known RBP	13.56	□□□□□ -0.24
DDX60-205	ENST00000513997	FOSB	P53539	338 aa		13.56	□□□□□ -0.24
DDX60-205	ENST00000513997	MAP2K5	Q13163	448 aa		13.56	□□□□□ -0.24
DDX60-205	ENST00000513997	NUTM2F	A1L443	756 aa		13.55	□□□□□ -0.24
DDX60-205	ENST00000513997	TYW1B	Q6NUM6	668 aa		13.54	□□□□□ -0.24
DDX60-205	ENST00000513997		E9PSI1	815 aa		13.53	□□□□□ -0.24
DDX60-205	ENST00000513997	MYT1	Q01538	1121 aa		13.53	□□□□□ -0.24
DDX60-205	ENST00000513997	EN1	Q05925	392 aa	Predicted RBP	13.53	□□□□□ -0.24
DDX60-205	ENST00000513997	LHX6	Q9UPM6	363 aa		13.53	□□□□□ -0.24
DDX60-205	ENST00000513997	IRF6	O14896	467 aa		13.52	□□□□□ -0.25
DDX60-205	ENST00000513997	ZNF454	Q8N9F8	522 aa		13.52	□□□□□ -0.25
DDX60-205	ENST00000513997	FBXW7	Q969H0	707 aa		13.52	□□□□□ -0.25
DDX60-205	ENST00000513997	RBM33	Q96EV2	1170 aa	Known RBP	13.5	□□□□□ -0.25
DDX60-205	ENST00000513997	POM121	Q96HA1	1249 aa		13.5	□□□□□ -0.25
DDX60-205	ENST00000513997	MAP3K7	O43318	606 aa		13.49	□□□□□ -0.25
DDX60-205	ENST00000513997	ZDHHC16	Q969W1	377 aa		13.49	□□□□□ -0.25
DDX60-205	ENST00000513997	PLSCR2	Q9NRY7	297 aa		13.49	□□□□□ -0.25
DDX60-205	ENST00000513997	TSR1	Q2NL82	804 aa	Known RBP	13.47	□□□□□ -0.25
DDX60-205	ENST00000513997	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.46	□□□□□ -0.25
DDX60-205	ENST00000513997	FCHSD2	O94868	740 aa		13.46	□□□□□ -0.25
DDX60-205	ENST00000513997	HSP90B1	P14625	803 aa	Known RBP	13.46	□□□□□ -0.25
DDX60-205	ENST00000513997	PTGDR	Q13258	359 aa		13.46	□□□□□ -0.25
DDX60-205	ENST00000513997	CDHR5	Q9HBB8	845 aa		13.46	□□□□□ -0.25
DDX60-205	ENST00000513997	PSD	A5PKW4	1024 aa	Predicted RBP	13.45	□□□□□ -0.26
DDX60-205	ENST00000513997	ADAM33	Q9BZ11	813 aa		13.45	□□□□□ -0.26
DDX60-205	ENST00000513997	NPDC1	Q9NQX5	325 aa	Predicted RBP	13.45	□□□□□ -0.26
DDX60-205	ENST00000513997	ST18	O60284	1047 aa		13.44	□□□□□ -0.26
DDX60-205	ENST00000513997	GNPAT	O15228	680 aa		13.43	□□□□□ -0.26
DDX60-205	ENST00000513997	CDK11B	P21127	795 aa	Known RBP	13.43	□□□□□ -0.26
DDX60-205	ENST00000513997	TTLL12	Q14166	644 aa	Predicted RBP	13.43	□□□□□ -0.26
DDX60-205	ENST00000513997	HIC1	Q14526	733 aa		13.43	□□□□□ -0.26
DDX60-205	ENST00000513997	C6orf132	Q5T0Z8	1188 aa		13.43	□□□□□ -0.26
DDX60-205	ENST00000513997	CDK11A	Q9UQ88	783 aa	Predicted RBP	13.43	□□□□□ -0.26
DDX60-205	ENST00000513997	PATL2	C9JE40	543 aa	Known RBP	13.42	□□□□□ -0.26
DDX60-205	ENST00000513997	SH3D19	Q5HYK7	790 aa		13.42	□□□□□ -0.26
DDX60-205	ENST00000513997	PPP4R3B	Q5MIZ7	849 aa		13.42	□□□□□ -0.26
DDX60-205	ENST00000513997	PPP1R15A	O75807	674 aa	Predicted RBP	13.41	□□□□□ -0.26
DDX60-205	ENST00000513997	MS4A1	P11836	297 aa		13.4	□□□□□ -0.26
DDX60-205	ENST00000513997	FECH	P22830	423 aa		13.4	□□□□□ -0.26
DDX60-205	ENST00000513997	PDE4C	Q08493	712 aa		13.4	□□□□□ -0.26
DDX60-205	ENST00000513997	PUS7	Q96PZ0	661 aa	Known RBP	13.4	□□□□□ -0.26
DDX60-205	ENST00000513997	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.38	□□□□□ -0.27
DDX60-205	ENST00000513997	FAM163A	Q96GL9	167 aa	Predicted RBP	13.37	□□□□□ -0.27
DDX60-205	ENST00000513997	BCL2L12	Q9HB09	334 aa		13.37	□□□□□ -0.27
DDX60-205	ENST00000513997	COG6	Q9Y2V7	657 aa		13.36	□□□□□ -0.27
DDX60-205	ENST00000513997	CERK	Q8TCT0	537 aa		13.35	□□□□□ -0.27
DDX60-205	ENST00000513997	AMOTL2	Q9Y2J4	779 aa		13.34	□□□□□ -0.27

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