RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 MXD4Q14582 209 aaPredicted RBP21.89■■□□□ 1.09
UPF1-207ENST00000599848 STRBPQ96SI9 672 aaKnown RBP21.89■■□□□ 1.09
UPF1-207ENST00000599848 ADAM22Q9P0K1 906 aa21.89■■□□□ 1.09
UPF1-207ENST00000599848 THEGQ9P2T0 379 aa21.89■■□□□ 1.09
UPF1-207ENST00000599848 UBE4BO95155 1302 aa21.89■■□□□ 1.09
UPF1-207ENST00000599848 RFX7Q2KHR2 1363 aa21.88■■□□□ 1.09
UPF1-207ENST00000599848 KRT37O76014 449 aa21.88■■□□□ 1.09
UPF1-207ENST00000599848 MYBL1P10243 752 aa21.88■■□□□ 1.09
UPF1-207ENST00000599848 GPIHBP1Q8IV16 184 aa21.88■■□□□ 1.09
UPF1-207ENST00000599848 ANKRD13AQ8IZ07 590 aa21.88■■□□□ 1.09
UPF1-207ENST00000599848 GPATCH11Q8N954 259 aa21.88■■□□□ 1.09
UPF1-207ENST00000599848 TADA2AO75478 443 aa21.88■■□□□ 1.09
UPF1-207ENST00000599848 USP11P51784 963 aa21.88■■□□□ 1.09
UPF1-207ENST00000599848 GLB1LQ6UWU2 654 aa21.88■■□□□ 1.09
UPF1-207ENST00000599848 GDAP1L1Q96MZ0 367 aa21.88■■□□□ 1.09
UPF1-207ENST00000599848 PIH1D3Q9NQM4 214 aaKnown RBP21.88■■□□□ 1.09
UPF1-207ENST00000599848 PCDHA5Q9Y5H7 936 aa21.88■■□□□ 1.09
UPF1-207ENST00000599848 F5H6K3 240 aa21.88■■□□□ 1.09
UPF1-207ENST00000599848 KLRC3Q07444 240 aa21.88■■□□□ 1.09
UPF1-207ENST00000599848 GABBR1Q9UBS5 961 aa21.88■■□□□ 1.09
UPF1-207ENST00000599848 CLIC4Q9Y696 253 aa21.88■■□□□ 1.09
UPF1-207ENST00000599848 PVALEFA0A1B0GWK0 134 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 EFCAB14O75071 495 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 HIP1RO75146 1068 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 DCUN1D1Q96GG9 259 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 GLT1D1Q96MS3 346 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 TMEM47Q9BQJ4 181 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 TEKT2Q9UIF3 430 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 RRN3P2A6NIE6 340 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 CPT1AP50416 773 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 GTF2A1P52655 376 aaPredicted RBP21.87■■□□□ 1.09
UPF1-207ENST00000599848 NAALADL2Q58DX5 795 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 NSUN7Q8NE18 718 aaKnown RBP21.87■■□□□ 1.09
UPF1-207ENST00000599848 SERPINI1Q99574 410 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 CYP19A1P11511 503 aaPredicted RBP21.87■■□□□ 1.09
UPF1-207ENST00000599848 NDUFA8P51970 172 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 LRRC41Q15345 812 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 XRRA1Q6P2D8 792 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 ZNF280CQ8ND82 737 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 PBXIP1Q96AQ6 731 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 KRT7P08729 469 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 GTF2A2P52657 109 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 ALKBH8Q96BT7 664 aaKnown RBP21.87■■□□□ 1.09
UPF1-207ENST00000599848 ZNF235Q14590 738 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 TEKT4Q8WW24 435 aa21.87■■□□□ 1.09
UPF1-207ENST00000599848 PUS7LQ9H0K6 701 aaKnown RBP21.87■■□□□ 1.09
UPF1-207ENST00000599848 KPNA7A9QM74 516 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 DYNLT1P63172 113 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 GRM4Q14833 912 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 SWSAP1Q6NVH7 229 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 GPRC5AQ8NFJ5 357 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 CDC26Q8NHZ8 85 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 TTC8Q8TAM2 541 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 OTUB1Q96FW1 271 aaPredicted RBP21.86■■□□□ 1.09
UPF1-207ENST00000599848 PI4K2BG5E9Z4 385 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 SMARCA1P28370 1054 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 POLR3FQ9H1D9 316 aaPredicted RBP21.86■■□□□ 1.09
UPF1-207ENST00000599848 MED4Q9NPJ6 270 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 GDAQ9Y2T3 454 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 GOLGA8JA6NMD2 632 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 E5RI56 91 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 TFRCP02786 760 aaKnown RBP21.86■■□□□ 1.09
UPF1-207ENST00000599848 C6orf222P0C671 652 aaPredicted RBP21.86■■□□□ 1.09
UPF1-207ENST00000599848 SLC12A1Q13621 1099 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 EPHA7Q15375 998 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 PFKFB3Q16875 520 aaPredicted RBP21.86■■□□□ 1.09
UPF1-207ENST00000599848 TAB3Q8N5C8 712 aaPredicted RBP21.86■■□□□ 1.09
UPF1-207ENST00000599848 CHST13Q8NET6 341 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 DCDC2CA8MYV0 355 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 HNRNPCL2B2RXH8 293 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 PSMD3O43242 534 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 HNRNPCL1O60812 293 aaKnown RBP21.86■■□□□ 1.09
UPF1-207ENST00000599848 STAT5BP51692 787 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 NR1H3Q13133 447 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 ZNF827Q17R98 1081 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 CDKL3Q8IVW4 592 aaPredicted RBP21.86■■□□□ 1.09
UPF1-207ENST00000599848 ARRDC4Q8NCT1 418 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 OSBP2Q969R2 916 aa21.86■■□□□ 1.09
UPF1-207ENST00000599848 TTC37Q6PGP7 1564 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 UBN2Q6ZU65 1347 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 A8MXQ7 604 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 CD4P01730 458 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 HSD17B4P51659 736 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 AMPD2Q01433 879 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 NFIXQ14938 502 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 KIRREL3Q8IZU9 778 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 ASAP3Q8TDY4 903 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 TMEM132BQ14DG7 1078 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 SYNGAP1Q96PV0 1343 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 ARHGDIAP52565 204 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 DUOXA2Q1HG44 320 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 ZFP91Q96JP5 570 aaPredicted RBP21.85■■□□□ 1.09
UPF1-207ENST00000599848 ABCF3Q9NUQ8 709 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 SAMD9LQ8IVG5 1584 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 CCL15-CCL14A0A0B4J2E2 113 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 RGS2P41220 211 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 ALX1Q15699 326 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 CCL15Q16663 113 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 ACBD5Q5T8D3 534 aaPredicted RBP21.85■■□□□ 1.09
UPF1-207ENST00000599848 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms