RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 ATF7P17544 494 aaPredicted RBP12.88□□□□□ -0.35
VPS33B-204ENST00000554660 UBE3AQ05086 875 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 ITGB3BPQ13352 177 aaPredicted RBP12.88□□□□□ -0.35
VPS33B-204ENST00000554660 GLIPR1L2Q4G1C9 344 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 FAM102BQ5T8I3 360 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 LLGL2Q6P1M3 1020 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 MTHFD1LQ6UB35 978 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 SASS6Q6UVJ0 657 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 NFXL1Q6ZNB6 911 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 HEATR3Q7Z4Q2 680 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 CCDC82Q8N4S0 544 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 COLGALT1Q8NBJ5 622 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 ADAM2Q99965 735 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 CDHR5Q9HBB8 845 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 TMEM260Q9NX78 707 aa12.88□□□□□ -0.35
VPS33B-204ENST00000554660 DENND3A2RUS2 1198 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 VPS37CA5D8V6 355 aaPredicted RBP12.87□□□□□ -0.35
VPS33B-204ENST00000554660 DDX39AO00148 427 aaKnown RBP12.87□□□□□ -0.35
VPS33B-204ENST00000554660 SH2B2O14492 632 aaPredicted RBP12.87□□□□□ -0.35
VPS33B-204ENST00000554660 FSCN2O14926 492 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 RPS6KA5O75582 802 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 ARP10275 920 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 SMARCA1P28370 1054 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 AVPR2P30518 371 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 PBX3P40426 434 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 TECP42680 631 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 STAT5BP51692 787 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 PLPPR4Q7Z2D5 763 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 ZBTB33Q86T24 672 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 RNF214Q8ND24 703 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 FAM200AQ8TCP9 573 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 ATOH1Q92858 354 aaPredicted RBP12.87□□□□□ -0.35
VPS33B-204ENST00000554660 CDCA3Q99618 268 aaPredicted RBP12.87□□□□□ -0.35
VPS33B-204ENST00000554660 MXRA8Q9BRK3 442 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 LZTS2Q9BRK4 669 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 SDF4Q9BRK5 362 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 NUP62CLQ9H1M0 184 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 PDCL3Q9H2J4 239 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 AAASQ9NRG9 546 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 RGS18Q9NS28 235 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 SPTLC3Q9NUV7 552 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 TYW1Q9NV66 732 aaKnown RBP12.87□□□□□ -0.35
VPS33B-204ENST00000554660 CFAP45Q9UL16 551 aa12.87□□□□□ -0.35
VPS33B-204ENST00000554660 CCDC69A6NI79 296 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 C9IYK1 514 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 H0Y858 1186 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 MAFGO15525 162 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 PFKFB2O60825 505 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 ADCY5O95622 1261 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 SRGAP2BP0DMP2 458 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 CPA1P15085 419 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 KLRC1P26715 233 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 GNAQP50148 359 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 HSP90AA2PQ14568 343 aaPredicted RBP12.86□□□□□ -0.35
VPS33B-204ENST00000554660 ANKRD54Q6NXT1 300 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 SYCE2Q6PIF2 218 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 SLC24A5Q71RS6 500 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.86□□□□□ -0.35
VPS33B-204ENST00000554660 UBE2Q2Q8WVN8 375 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 OSMRQ99650 979 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 TCF25Q9BQ70 676 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 S1PR5Q9H228 398 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 CWH43Q9H720 699 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 AGO4Q9HCK5 861 aaKnown RBP12.86□□□□□ -0.35
VPS33B-204ENST00000554660 ENTPD7Q9NQZ7 604 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 C1orf112Q9NSG2 853 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 ST3GAL5Q9UNP4 418 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.86□□□□□ -0.35
VPS33B-204ENST00000554660 PLXNA3P51805 1871 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 NFASCO94856 1347 aa12.86□□□□□ -0.35
VPS33B-204ENST00000554660 HIDE1A8MVS5 230 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 BACH1O14867 736 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 CCNE2O96020 404 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 LAG3P18627 525 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 EVCP57679 992 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 KCNC3Q14003 757 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 KIZQ2M2Z5 673 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 WWC2Q6AWC2 1192 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 TYW1BQ6NUM6 668 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 TMTC3Q6ZXV5 915 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 DHX32Q7L7V1 743 aaKnown RBP12.85□□□□□ -0.35
VPS33B-204ENST00000554660 FAM228AQ86W67 206 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 MICU3Q86XE3 530 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 CCDC60Q8IWA6 550 aaPredicted RBP12.85□□□□□ -0.35
VPS33B-204ENST00000554660 KIAA0319LQ8IZA0 1049 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 NME8Q8N427 588 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 MRPS27Q92552 414 aaKnown RBP12.85□□□□□ -0.35
VPS33B-204ENST00000554660 LRRC2Q9BYS8 371 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 SMOC2Q9H3U7 446 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 CLSTN2Q9H4D0 955 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 DMDP11532 3685 aa12.85□□□□□ -0.35
VPS33B-204ENST00000554660 RESTQ13127 1097 aa12.84□□□□□ -0.35
VPS33B-204ENST00000554660 KREMEN2Q8NCW0 462 aa12.84□□□□□ -0.35
VPS33B-204ENST00000554660 LEO1Q8WVC0 666 aaPredicted RBP12.84□□□□□ -0.35
VPS33B-204ENST00000554660 ZNF274Q96GC6 653 aaPredicted RBP12.84□□□□□ -0.35
VPS33B-204ENST00000554660 SPATA32Q96LK8 384 aa12.84□□□□□ -0.35
VPS33B-204ENST00000554660 ANO3Q9BYT9 981 aa12.84□□□□□ -0.35
VPS33B-204ENST00000554660 ATP6V0A4Q9HBG4 840 aa12.84□□□□□ -0.35
VPS33B-204ENST00000554660 TMEM161AQ9NX61 479 aa12.84□□□□□ -0.35
VPS33B-204ENST00000554660 CNTNAP5Q8WYK1 1306 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms