RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 DNAI1Q9UI46 699 aa6.92□□□□□ -1.3
PTPN4-212ENST00000488896 RBM8AQ9Y5S9 174 aaKnown RBP6.92□□□□□ -1.3
PTPN4-212ENST00000488896 RAD17O75943 681 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 PRPF6O94906 941 aaKnown RBP6.91□□□□□ -1.3
PTPN4-212ENST00000488896 POU3F2P20265 443 aaPredicted RBP6.91□□□□□ -1.3
PTPN4-212ENST00000488896 COMTP21964 271 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 SCNN1BP51168 640 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 KPNA1P52294 538 aaPredicted RBP6.91□□□□□ -1.3
PTPN4-212ENST00000488896 HGFACQ04756 655 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 ADCY2Q08462 1091 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 ADCY1Q08828 1119 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 SEPT7Q16181 437 aaKnown RBP6.91□□□□□ -1.3
PTPN4-212ENST00000488896 UNQ6494/PRO21346Q6UXR6 183 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 KIF18BQ86Y91 864 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 PHYKPLQ8IUZ5 450 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 PASD1Q8IV76 773 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 GPR135Q8IZ08 494 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 PPM1KQ8N3J5 372 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 LEO1Q8WVC0 666 aaPredicted RBP6.91□□□□□ -1.3
PTPN4-212ENST00000488896 GCDHQ92947 438 aaPredicted RBP6.91□□□□□ -1.3
PTPN4-212ENST00000488896 DYDC2Q96IM9 177 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 ORAI3Q9BRQ5 295 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 KRTAP4-2Q9BYR5 136 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 ZMAT4Q9H898 229 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 KCMF1Q9P0J7 381 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 PLAAQ9Y263 795 aa6.91□□□□□ -1.3
PTPN4-212ENST00000488896 GOLGA8BA8MQT2 603 aa6.9□□□□□ -1.3
PTPN4-212ENST00000488896 MATN3O15232 486 aa6.9□□□□□ -1.3
PTPN4-212ENST00000488896 H2AFYO75367 372 aaKnown RBP6.9□□□□□ -1.3
PTPN4-212ENST00000488896 ACO1P21399 889 aaKnown RBP6.9□□□□□ -1.3
PTPN4-212ENST00000488896 MSX2P35548 267 aaPredicted RBP6.9□□□□□ -1.3
PTPN4-212ENST00000488896 IL2P60568 153 aa6.9□□□□□ -1.3
PTPN4-212ENST00000488896 NOP9Q86U38 636 aaKnown RBP6.9□□□□□ -1.3
PTPN4-212ENST00000488896 AHI1Q8N157 1196 aa6.9□□□□□ -1.3
PTPN4-212ENST00000488896 SHCBP1Q8NEM2 672 aa6.9□□□□□ -1.3
PTPN4-212ENST00000488896 RPL10LQ96L21 214 aaKnown RBP6.9□□□□□ -1.3
PTPN4-212ENST00000488896 VWA7Q9Y334 891 aa6.9□□□□□ -1.3
PTPN4-212ENST00000488896 CTDP1Q9Y5B0 961 aaPredicted RBP6.9□□□□□ -1.3
PTPN4-212ENST00000488896 LCHNA4D1U4 455 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 C1QTNF3-AMACRE9PGA6 284 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 SLC26A4O43511 780 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 TGM5O43548 720 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 MAFO75444 373 aaPredicted RBP6.89□□□□□ -1.31
PTPN4-212ENST00000488896 MYCLP1P12525 358 aaPredicted RBP6.89□□□□□ -1.31
PTPN4-212ENST00000488896 TNFRSF1AP19438 455 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 RPS19P39019 145 aaKnown RBP6.89□□□□□ -1.31
PTPN4-212ENST00000488896 BCAR1P56945 870 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 FOXL1Q12952 345 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 DUSP8Q13202 625 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 R3HDM1Q15032 1099 aaKnown RBP6.89□□□□□ -1.31
PTPN4-212ENST00000488896 PRKD1Q15139 912 aaPredicted RBP6.89□□□□□ -1.31
PTPN4-212ENST00000488896 POLNQ7Z5Q5 900 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 KIAA0907Q7Z7F0 614 aaPredicted RBP6.89□□□□□ -1.31
PTPN4-212ENST00000488896 ZZZ3Q8IYH5 903 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 EFHBQ8N7U6 833 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 SMC1BQ8NDV3 1235 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 OR2W6PQ8NHA6 318 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 GFM2Q969S9 779 aaKnown RBP6.89□□□□□ -1.31
PTPN4-212ENST00000488896 WDR92Q96MX6 357 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 SEMA4AQ9H3S1 761 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 MS4A5Q9H3V2 200 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 MTG2Q9H4K7 406 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 AGO3Q9H9G7 860 aaKnown RBP6.89□□□□□ -1.31
PTPN4-212ENST00000488896 SPTLC3Q9NUV7 552 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 POLR3BQ9NW08 1133 aaPredicted RBP6.89□□□□□ -1.31
PTPN4-212ENST00000488896 TBX22Q9Y458 520 aa6.89□□□□□ -1.31
PTPN4-212ENST00000488896 C2orf78A6NCI8 922 aa6.88□□□□□ -1.31
PTPN4-212ENST00000488896 HNRNPLP14866 589 aaKnown RBP eCLIP6.88□□□□□ -1.31
PTPN4-212ENST00000488896 CD40P25942 277 aa6.88□□□□□ -1.31
PTPN4-212ENST00000488896 SESN2P58004 480 aaPredicted RBP6.88□□□□□ -1.31
PTPN4-212ENST00000488896 BPIFB4P59827 614 aa6.88□□□□□ -1.31
PTPN4-212ENST00000488896 SMAD3P84022 425 aaKnown RBP6.88□□□□□ -1.31
PTPN4-212ENST00000488896 RIN1Q13671 783 aa6.88□□□□□ -1.31
PTPN4-212ENST00000488896 SAFB2Q14151 953 aaKnown RBP eCLIP6.88□□□□□ -1.31
PTPN4-212ENST00000488896 GRM7Q14831 915 aa6.88□□□□□ -1.31
PTPN4-212ENST00000488896 ANKRD53Q8N9V6 530 aa6.88□□□□□ -1.31
PTPN4-212ENST00000488896 PLA2G3Q9NZ20 509 aa6.88□□□□□ -1.31
PTPN4-212ENST00000488896 MSRAQ9UJ68 235 aa6.88□□□□□ -1.31
PTPN4-212ENST00000488896 SLC30A1Q9Y6M5 507 aa6.88□□□□□ -1.31
PTPN4-212ENST00000488896 A0A1W2PRX2 142 aa6.87□□□□□ -1.31
PTPN4-212ENST00000488896 ENPP3O14638 875 aa6.87□□□□□ -1.31
PTPN4-212ENST00000488896 PDE8AO60658 829 aa6.87□□□□□ -1.31
PTPN4-212ENST00000488896 PCDH8O95206 1070 aa6.87□□□□□ -1.31
PTPN4-212ENST00000488896 GYS2P54840 703 aa6.87□□□□□ -1.31
PTPN4-212ENST00000488896 TCIRG1Q13488 830 aa6.87□□□□□ -1.31
PTPN4-212ENST00000488896 KIAA1841Q6NSI8 718 aa6.87□□□□□ -1.31
PTPN4-212ENST00000488896 Q6ZSN1 163 aa6.87□□□□□ -1.31
PTPN4-212ENST00000488896 BMP8AQ7Z5Y6 402 aa6.87□□□□□ -1.31
PTPN4-212ENST00000488896 ZNF808Q8N4W9 903 aaPredicted RBP6.87□□□□□ -1.31
PTPN4-212ENST00000488896 NKD2Q969F2 451 aaPredicted RBP6.87□□□□□ -1.31
PTPN4-212ENST00000488896 SLC7A6OSQ96CW6 309 aaPredicted RBP6.87□□□□□ -1.31
PTPN4-212ENST00000488896 NOL10Q9BSC4 688 aaKnown RBP6.87□□□□□ -1.31
PTPN4-212ENST00000488896 NELFAQ9H3P2 528 aa6.87□□□□□ -1.31
PTPN4-212ENST00000488896 SYNPO2Q9UMS6 1093 aa6.87□□□□□ -1.31
PTPN4-212ENST00000488896 GSG1L2A8MUP6 293 aa6.86□□□□□ -1.31
PTPN4-212ENST00000488896 ELL2O00472 640 aaPredicted RBP6.86□□□□□ -1.31
PTPN4-212ENST00000488896 AMHP03971 560 aa6.86□□□□□ -1.31
PTPN4-212ENST00000488896 ADCYAP1R1P41586 468 aa6.86□□□□□ -1.31
PTPN4-212ENST00000488896 ADCY7P51828 1080 aa6.86□□□□□ -1.31
PTPN4-212ENST00000488896 ZXDAP98168 799 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms