RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 F8VZ95 297 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 DHX15O43143 795 aaKnown RBP9.75□□□□□ -0.85
SYNE1-217ENST00000466159 HEXIM1O94992 359 aaKnown RBP9.75□□□□□ -0.85
SYNE1-217ENST00000466159 KIF4AO95239 1232 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 SOX5P35711 763 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 STAT1P42224 750 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 EPHB4P54760 987 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 GUCY2DQ02846 1103 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 DRAP1Q14919 205 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-217ENST00000466159 TRADDQ15628 312 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 GLE1Q53GS7 698 aaKnown RBP9.75□□□□□ -0.85
SYNE1-217ENST00000466159 STXBP4Q6ZWJ1 553 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 TRMT1LQ7Z2T5 733 aaKnown RBP9.75□□□□□ -0.85
SYNE1-217ENST00000466159 USP38Q8NB14 1042 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 TPCN2Q8NHX9 752 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 OLIG1Q8TAK6 271 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 LNX1Q8TBB1 728 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-217ENST00000466159 STRA6Q9BX79 667 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 EPB41L5Q9HCM4 733 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 ZNRF3Q9ULT6 936 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 BCS1LQ9Y276 419 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 TMCO5BA8MYB1 307 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 EXOC3O60645 756 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 PPP1R37O75864 691 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 H2AFZP0C0S5 128 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 ALAS1P13196 640 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 FERP16591 822 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 ACTN2P35609 894 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 CXCL9Q07325 125 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 ITGB3BPQ13352 177 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-217ENST00000466159 TAF3Q5VWG9 929 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 H2AFVQ71UI9 128 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 VPS36Q86VN1 386 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 GLYCTKQ8IVS8 523 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 AFAP1L1Q8TED9 768 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 IFT81Q8WYA0 676 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 TAF4BQ92750 862 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 GPR88Q9GZN0 384 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 DEFB129Q9H1M3 183 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 PCIF1Q9H4Z3 704 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 GDF3Q9NR23 364 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 NFU1Q9UMS0 254 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 SAMM50Q9Y512 469 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 ZHX2Q9Y6X8 837 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 UBE4BO95155 1302 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 RPTORQ8N122 1335 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 TMEM150BA6NC51 233 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 PHF20L1A8MW92 1017 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 K7ENM7 598 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 P4HBP07237 508 aaKnown RBP9.74□□□□□ -0.85
SYNE1-217ENST00000466159 FAM153BP0C7A2 387 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 TNFRSF8P28908 595 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 GALCP54803 685 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 DLG4P78352 724 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 MRPS9P82933 396 aaKnown RBP9.74□□□□□ -0.85
SYNE1-217ENST00000466159 MAP3K10Q02779 954 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 TKFCQ3LXA3 575 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 FAM153CQ494X1 144 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 MUM1L1Q5H9M0 696 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 EMBQ6PCB8 327 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 KLHL7Q8IXQ5 586 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 IFT20Q8IY31 132 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 NIM1KQ8IY84 436 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 PRPF38AQ8NAV1 312 aaKnown RBP9.74□□□□□ -0.85
SYNE1-217ENST00000466159 MTMR14Q8NCE2 650 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 AGBL3Q8NEM8 1001 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 SLC30A5Q8TAD4 765 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 STK33Q9BYT3 514 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 INTS2Q9H0H0 1204 aaKnown RBP9.74□□□□□ -0.85
SYNE1-217ENST00000466159 RAVER2Q9HCJ3 691 aaKnown RBP9.74□□□□□ -0.85
SYNE1-217ENST00000466159 FAM153AQ9UHL3 310 aa9.74□□□□□ -0.85
SYNE1-217ENST00000466159 RAD51CO43502 376 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 CEP104O60308 925 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 LRRN2O75325 713 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 BCRP11274 1271 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 MYL7Q01449 175 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 BFSP1Q12934 665 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 SPP2Q13103 211 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 RASA3Q14644 834 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 IFI16Q16666 785 aaKnown RBP9.73□□□□□ -0.85
SYNE1-217ENST00000466159 ARHGAP44Q17R89 818 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 KCTD19Q17RG1 926 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-217ENST00000466159 PHLDB3Q6NSJ2 640 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 METTL13Q8N6R0 699 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 GOLGA6L1Q8N7Z2 621 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 GOLGA5Q8TBA6 731 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 ZBED3Q96IU2 234 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-217ENST00000466159 AGO4Q9HCK5 861 aaKnown RBP9.73□□□□□ -0.85
SYNE1-217ENST00000466159 OSGEPQ9NPF4 335 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 TMEM59LQ9UK28 342 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 EGFRP00533 1210 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 ZBTB48P10074 688 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-217ENST00000466159 ANXA13P27216 316 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 PPP2R5AQ15172 486 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 TBC1D10BQ4KMP7 808 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-217ENST00000466159 LEKR1Q6ZMV7 388 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 PEX26Q7Z412 305 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 PROCA1Q8NCQ7 364 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-217ENST00000466159 ZSWIM2Q8NEG5 633 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 SYTL5Q8TDW5 730 aaPredicted RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms