RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 SNX29Q8TEQ0 813 aa9.73□□□□□ -0.85
COL28A1-205ENST00000453441 LMBR1Q8WVP7 490 aa9.73□□□□□ -0.85
COL28A1-205ENST00000453441 DPF3Q92784 378 aa9.73□□□□□ -0.85
COL28A1-205ENST00000453441 CALML4Q96GE6 196 aa9.73□□□□□ -0.85
COL28A1-205ENST00000453441 CDK5RAP3Q96JB5 506 aa9.73□□□□□ -0.85
COL28A1-205ENST00000453441 CCDC43Q96MW1 224 aaKnown RBP9.73□□□□□ -0.85
COL28A1-205ENST00000453441 RNPEPQ9H4A4 650 aa9.73□□□□□ -0.85
COL28A1-205ENST00000453441 TUBE1Q9UJT0 475 aa9.73□□□□□ -0.85
COL28A1-205ENST00000453441 TELO2Q9Y4R8 837 aa9.73□□□□□ -0.85
COL28A1-205ENST00000453441 ALPK3Q96L96 1907 aa9.73□□□□□ -0.85
COL28A1-205ENST00000453441 ZNF862O60290 1169 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 B4GALT4O60513 344 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 CUTAO60888 179 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 JUNDP17535 347 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 ATP4AP20648 1035 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 TMOD1P28289 359 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 YWHABP31946 246 aaKnown RBP9.72□□□□□ -0.85
COL28A1-205ENST00000453441 CCT6AP40227 531 aaKnown RBP9.72□□□□□ -0.85
COL28A1-205ENST00000453441 CHMP4BP1P59074 171 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 ADAM17P78536 824 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 CDC42EP1Q00587 391 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 DNM1Q05193 864 aaKnown RBP9.72□□□□□ -0.85
COL28A1-205ENST00000453441 FAAP100Q0VG06 881 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 TARBP2Q15633 366 aaKnown RBP9.72□□□□□ -0.85
COL28A1-205ENST00000453441 UGCGQ16739 394 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 TPRNQ4KMQ1 711 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 PLA2G2CQ5R387 149 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 HYIQ5T013 277 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 PRPF38BQ5VTL8 546 aaKnown RBP9.72□□□□□ -0.85
COL28A1-205ENST00000453441 FOXD4L5Q5VV16 416 aaPredicted RBP9.72□□□□□ -0.85
COL28A1-205ENST00000453441 GDF6Q6KF10 455 aaPredicted RBP9.72□□□□□ -0.85
COL28A1-205ENST00000453441 ZNF598Q86UK7 904 aaKnown RBP9.72□□□□□ -0.85
COL28A1-205ENST00000453441 CATSPER3Q86XQ3 398 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 TPH2Q8IWU9 490 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 NME8Q8N427 588 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 FOXD4L4Q8WXT5 416 aaPredicted RBP9.72□□□□□ -0.85
COL28A1-205ENST00000453441 DYDC2Q96IM9 177 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 PYM1Q9BRP8 204 aaKnown RBP9.72□□□□□ -0.85
COL28A1-205ENST00000453441 CCSER1Q9C0I3 900 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 PDLIM7Q9NR12 457 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 TMEM39AQ9NV64 488 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 SETD4Q9NVD3 440 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 CCDC39Q9UFE4 941 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 FBXO2Q9UK22 296 aaPredicted RBP9.72□□□□□ -0.85
COL28A1-205ENST00000453441 DBR1Q9UK59 544 aaKnown RBP9.72□□□□□ -0.85
COL28A1-205ENST00000453441 RCOR1Q9UKL0 485 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 TBX21Q9UL17 535 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 PCDHA2Q9Y5H9 948 aa9.72□□□□□ -0.85
COL28A1-205ENST00000453441 SMIM35A0A1B0GVV1 85 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 DGAT1O75907 488 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 STBD1O95210 358 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 SPATA31C1P0DKV0 1188 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 NCLP19338 710 aaKnown RBP9.71□□□□□ -0.86
COL28A1-205ENST00000453441 RFC2P35250 354 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 ME1P48163 572 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 DNM2P50570 870 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 CYP4A11Q02928 519 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 CEBPZQ03701 1054 aaKnown RBP9.71□□□□□ -0.86
COL28A1-205ENST00000453441 TBC1D8BQ0IIM8 1120 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 CTTNQ14247 550 aaKnown RBP9.71□□□□□ -0.86
COL28A1-205ENST00000453441 IL17AQ16552 155 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 MTHFD1LQ6UB35 978 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 CABP7Q86V35 215 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 C7orf61Q8IZ16 206 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 SLC7A3Q8WY07 619 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 CEP170P1Q96L14 293 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 SPATA32Q96LK8 384 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 MAP7D2Q96T17 732 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 TRPV6Q9H1D0 765 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 CYP26B1Q9NR63 512 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 TRMT13Q9NUP7 481 aaKnown RBP9.71□□□□□ -0.86
COL28A1-205ENST00000453441 RGL1Q9NZL6 768 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 KCND2Q9NZV8 630 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 TFIP11Q9UBB9 837 aaKnown RBP9.71□□□□□ -0.86
COL28A1-205ENST00000453441 DNM3Q9UQ16 869 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 TRIP12Q14669 1992 aaPredicted RBP9.71□□□□□ -0.86
COL28A1-205ENST00000453441 CEP290O15078 2479 aa9.71□□□□□ -0.86
COL28A1-205ENST00000453441 ZBTB42B2RXF5 422 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 M0QZ92 97 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 ZBTB24O43167 697 aaPredicted RBP9.7□□□□□ -0.86
COL28A1-205ENST00000453441 TREHO43280 583 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 MAFO75444 373 aaPredicted RBP9.7□□□□□ -0.86
COL28A1-205ENST00000453441 MED24O75448 989 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 C22orf31O95567 290 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 TIMP1P01033 207 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 PFKMP08237 780 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 CYP2C9P11712 490 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 RAG1P15918 1043 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 KLRC1P26715 233 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 MARCKSP29966 332 aaPredicted RBP9.7□□□□□ -0.86
COL28A1-205ENST00000453441 RARRES1P49788 294 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 MTERF2Q49AM1 385 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 XKR9Q5GH70 373 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 MARCH8Q5T0T0 291 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 IER5Q5VY09 327 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 DESI1Q6ICB0 168 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 CCDC73Q6ZRK6 1079 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 ANO5Q75V66 913 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 TMEM199Q8N511 208 aa9.7□□□□□ -0.86
COL28A1-205ENST00000453441 MCPH1Q8NEM0 835 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms