RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 UBE2Q1Q7Z7E8 422 aa13.65□□□□□ -0.22
LINC00339-204ENST00000434233 CCDC65Q8IXS2 484 aa13.65□□□□□ -0.22
LINC00339-204ENST00000434233 KIAA0319LQ8IZA0 1049 aa13.65□□□□□ -0.22
LINC00339-204ENST00000434233 ZNF710Q8N1W2 664 aa13.65□□□□□ -0.22
LINC00339-204ENST00000434233 METTL13Q8N6R0 699 aa13.65□□□□□ -0.22
LINC00339-204ENST00000434233 SPATA20Q8TB22 786 aa13.65□□□□□ -0.22
LINC00339-204ENST00000434233 DRC1Q96MC2 740 aa13.65□□□□□ -0.22
LINC00339-204ENST00000434233 TOX2Q96NM4 488 aa13.65□□□□□ -0.22
LINC00339-204ENST00000434233 GSDMAQ96QA5 445 aa13.65□□□□□ -0.22
LINC00339-204ENST00000434233 REEP2Q9BRK0 252 aa13.65□□□□□ -0.22
LINC00339-204ENST00000434233 BLZF1Q9H2G9 400 aa13.65□□□□□ -0.22
LINC00339-204ENST00000434233 PCDHA5Q9Y5H7 936 aa13.65□□□□□ -0.22
LINC00339-204ENST00000434233 COL4A3BPQ9Y5P4 624 aa13.65□□□□□ -0.22
LINC00339-204ENST00000434233 MYH11P35749 1972 aa13.65□□□□□ -0.22
LINC00339-204ENST00000434233 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.64□□□□□ -0.23
LINC00339-204ENST00000434233 TLR3O15455 904 aaKnown RBP13.64□□□□□ -0.23
LINC00339-204ENST00000434233 KLRC4O43908 158 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 FAM13AO94988 1023 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 CD4P01730 458 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 RPN1P04843 607 aaKnown RBP13.64□□□□□ -0.23
LINC00339-204ENST00000434233 IDEP14735 1019 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 GAP43P17677 238 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 CASP1P29466 404 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 ASIC1P78348 528 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 POU5F1BQ06416 359 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 RAD51AP2Q09MP3 1159 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 MAPK7Q13164 816 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 PSMD2Q13200 908 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 MXD4Q14582 209 aaPredicted RBP13.64□□□□□ -0.23
LINC00339-204ENST00000434233 KCNB1Q14721 858 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 CCDC183Q5T5S1 534 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 NT5DC1Q5TFE4 455 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 ANKRD33Q7Z3H0 272 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 RPAINQ86UA6 219 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 SERINC5Q86VE9 423 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 FAM126BQ8IXS8 530 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 DAW1Q8N136 415 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 LRRC71Q8N4P6 559 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 PSPC1Q8WXF1 523 aaKnown RBP13.64□□□□□ -0.23
LINC00339-204ENST00000434233 SMARCE1Q969G3 411 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 CCDC47Q96A33 483 aaKnown RBP13.64□□□□□ -0.23
LINC00339-204ENST00000434233 TMEM143Q96AN5 459 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 NTPCRQ9BSD7 190 aaKnown RBP13.64□□□□□ -0.23
LINC00339-204ENST00000434233 PARVGQ9HBI0 331 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 POLD4Q9HCU8 107 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 PANK4Q9NVE7 773 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 TMEM63CQ9P1W3 806 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 KIAA1468Q9P260 1216 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 LARSQ9P2J5 1176 aaKnown RBP13.64□□□□□ -0.23
LINC00339-204ENST00000434233 SUCLA2Q9P2R7 463 aaPredicted RBP13.64□□□□□ -0.23
LINC00339-204ENST00000434233 SEL1LQ9UBV2 794 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 HTTP42858 3142 aa13.64□□□□□ -0.23
LINC00339-204ENST00000434233 SFI1A8K8P3 1242 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 RSPH10B2B2RC85 870 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 B4GALT4O60513 344 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 TBCAO75347 108 aaKnown RBP13.63□□□□□ -0.23
LINC00339-204ENST00000434233 LETM1O95202 739 aaPredicted RBP13.63□□□□□ -0.23
LINC00339-204ENST00000434233 RSPH10BP0C881 870 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 MAPTP10636 758 aaKnown RBP13.63□□□□□ -0.23
LINC00339-204ENST00000434233 PLS3P13797 630 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 CLCN3P51790 818 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 ATN1P54259 1190 aaPredicted RBP13.63□□□□□ -0.23
LINC00339-204ENST00000434233 SOX10P56693 466 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 CACNB1Q02641 598 aaPredicted RBP13.63□□□□□ -0.23
LINC00339-204ENST00000434233 EHHADHQ08426 723 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 DRP2Q13474 957 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 PPP2R5AQ15172 486 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 KMT5BQ4FZB7 885 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 CAVIN1Q6NZI2 390 aaKnown RBP13.63□□□□□ -0.23
LINC00339-204ENST00000434233 RUFY4Q6ZNE9 571 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 RBM43Q6ZSC3 357 aaKnown RBP13.63□□□□□ -0.23
LINC00339-204ENST00000434233 RSPH3Q86UC2 560 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 MYCT1Q8N699 235 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 PRPF31Q8WWY3 499 aaKnown RBP13.63□□□□□ -0.23
LINC00339-204ENST00000434233 ZBTB10Q96DT7 871 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 IFT74Q96LB3 600 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 CTAGE1Q96RT6 745 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 MAP7D2Q96T17 732 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 POLR3FQ9H1D9 316 aaPredicted RBP13.63□□□□□ -0.23
LINC00339-204ENST00000434233 GPRC5CQ9NQ84 441 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 TRMT13Q9NUP7 481 aaKnown RBP13.63□□□□□ -0.23
LINC00339-204ENST00000434233 NOD1Q9Y239 953 aa13.63□□□□□ -0.23
LINC00339-204ENST00000434233 DCDC2CA8MYV0 355 aa13.62□□□□□ -0.23
LINC00339-204ENST00000434233 RHOBTB3O94955 611 aa13.62□□□□□ -0.23
LINC00339-204ENST00000434233 GLRA2P23416 452 aa13.62□□□□□ -0.23
LINC00339-204ENST00000434233 HOXD11P31277 338 aaPredicted RBP13.62□□□□□ -0.23
LINC00339-204ENST00000434233 SMTNP53814 917 aa13.62□□□□□ -0.23
LINC00339-204ENST00000434233 HERC4Q5GLZ8 1057 aaPredicted RBP13.62□□□□□ -0.23
LINC00339-204ENST00000434233 TNS4Q8IZW8 715 aa13.62□□□□□ -0.23
LINC00339-204ENST00000434233 SLC17A8Q8NDX2 589 aa13.62□□□□□ -0.23
LINC00339-204ENST00000434233 ASAP3Q8TDY4 903 aa13.62□□□□□ -0.23
LINC00339-204ENST00000434233 DNAJB3Q8WWF6 145 aa13.62□□□□□ -0.23
LINC00339-204ENST00000434233 SPIRE2Q8WWL2 714 aa13.62□□□□□ -0.23
LINC00339-204ENST00000434233 GTPBP4Q9BZE4 634 aaKnown RBP13.62□□□□□ -0.23
LINC00339-204ENST00000434233 TRPV6Q9H1D0 765 aa13.62□□□□□ -0.23
LINC00339-204ENST00000434233 ZHX3Q9H4I2 956 aa13.62□□□□□ -0.23
LINC00339-204ENST00000434233 RMND1Q9NWS8 449 aa13.62□□□□□ -0.23
LINC00339-204ENST00000434233 AKT3Q9Y243 479 aa13.62□□□□□ -0.23
LINC00339-204ENST00000434233 CCDC85CA6NKD9 419 aa13.61□□□□□ -0.23
LINC00339-204ENST00000434233 CAND2O75155 1236 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms