RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 LRRC55Q6ZSA7 311 aa20.52■□□□□ 0.88
CLN3-206ENST00000360019 TMEM143Q96AN5 459 aa20.52■□□□□ 0.88
CLN3-206ENST00000360019 NAP1L5Q96NT1 182 aaPredicted RBP20.52■□□□□ 0.88
CLN3-206ENST00000360019 TSG101Q99816 390 aa20.52■□□□□ 0.88
CLN3-206ENST00000360019 SAGE1Q9NXZ1 904 aa20.52■□□□□ 0.88
CLN3-206ENST00000360019 HBP1O60381 514 aa20.51■□□□□ 0.87
CLN3-206ENST00000360019 AKR1A1P14550 325 aa20.51■□□□□ 0.87
CLN3-206ENST00000360019 NPTX2P47972 431 aa20.51■□□□□ 0.87
CLN3-206ENST00000360019 UBASH3AP57075 661 aa20.51■□□□□ 0.87
CLN3-206ENST00000360019 RTP1P59025 263 aa20.51■□□□□ 0.87
CLN3-206ENST00000360019 TCP11X2Q5H9J9 407 aa20.51■□□□□ 0.87
CLN3-206ENST00000360019 NOC3LQ8WTT2 800 aaKnown RBP20.51■□□□□ 0.87
CLN3-206ENST00000360019 POLR3FQ9H1D9 316 aaPredicted RBP20.51■□□□□ 0.87
CLN3-206ENST00000360019 IKZF4Q9H2S9 585 aa20.51■□□□□ 0.87
CLN3-206ENST00000360019 C17orf75Q9HAS0 396 aa20.51■□□□□ 0.87
CLN3-206ENST00000360019 UBE4BO95155 1302 aa20.51■□□□□ 0.87
CLN3-206ENST00000360019 KCNJ18B7U540 433 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 H3BRB1 525 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 ELNP15502 786 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 DMP1Q13316 513 aaPredicted RBP20.5■□□□□ 0.87
CLN3-206ENST00000360019 KCNJ12Q14500 433 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 STXBP4Q6ZWJ1 553 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 TRAPPC12Q8WVT3 735 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 KIFC3Q9BVG8 833 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 ST6GALNAC4Q9H4F1 302 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 TUT1Q9H6E5 874 aaKnown RBP20.5■□□□□ 0.87
CLN3-206ENST00000360019 INTS13Q9NVM9 706 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 TRAF3IP3Q9Y228 551 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 Q9Y3F1 56 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 PCDHB13Q9Y5F0 798 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 SLC16A4O15374 487 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 CDC25BP30305 580 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 ARL2P36404 184 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 SPAG1Q07617 926 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 TBC1D8BQ0IIM8 1120 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 HAUS6Q7Z4H7 955 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 TMEM161BQ8NDZ6 487 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 ZNF296Q8WUU4 475 aaPredicted RBP20.5■□□□□ 0.87
CLN3-206ENST00000360019 SPIRE2Q8WWL2 714 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 NTPCRQ9BSD7 190 aaKnown RBP20.5■□□□□ 0.87
CLN3-206ENST00000360019 LIMA1Q9UHB6 759 aaKnown RBP20.5■□□□□ 0.87
CLN3-206ENST00000360019 ZNF215Q9UL58 517 aaPredicted RBP20.5■□□□□ 0.87
CLN3-206ENST00000360019 ADGRA3Q8IWK6 1321 aa20.5■□□□□ 0.87
CLN3-206ENST00000360019 IGKV6-21A0A0C4DH24 114 aa20.49■□□□□ 0.87
CLN3-206ENST00000360019 CCDC169A6NNP5 214 aa20.49■□□□□ 0.87
CLN3-206ENST00000360019 PDXKO00764 312 aa20.49■□□□□ 0.87
CLN3-206ENST00000360019 TGFB1I1O43294 461 aa20.49■□□□□ 0.87
CLN3-206ENST00000360019 HOXD10P28358 340 aa20.49■□□□□ 0.87
CLN3-206ENST00000360019 GTF2BQ00403 316 aa20.49■□□□□ 0.87
CLN3-206ENST00000360019 CACNB2Q08289 660 aaPredicted RBP20.49■□□□□ 0.87
CLN3-206ENST00000360019 DRP2Q13474 957 aa20.49■□□□□ 0.87
CLN3-206ENST00000360019 KRT31Q15323 416 aa20.49■□□□□ 0.87
CLN3-206ENST00000360019 PPP4R3CPQ6ZMV5 832 aa20.49■□□□□ 0.87
CLN3-206ENST00000360019 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.49■□□□□ 0.87
CLN3-206ENST00000360019 ZC3H3Q8IXZ2 948 aaKnown RBP20.49■□□□□ 0.87
CLN3-206ENST00000360019 ASAP3Q8TDY4 903 aa20.49■□□□□ 0.87
CLN3-206ENST00000360019 TYW1Q9NV66 732 aaKnown RBP20.49■□□□□ 0.87
CLN3-206ENST00000360019 A0A1B0GTH6 734 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 LRRC10BA6NIK2 292 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 FKTNO75072 461 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 INSRRP14616 1297 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 GLRA2P23416 452 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 EEF1GP26641 437 aaKnown RBP20.48■□□□□ 0.87
CLN3-206ENST00000360019 FKBP3Q00688 224 aaKnown RBP20.48■□□□□ 0.87
CLN3-206ENST00000360019 MKRN4PQ13434 485 aaPredicted RBP20.48■□□□□ 0.87
CLN3-206ENST00000360019 ALCAMQ13740 583 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 EDRF1Q3B7T1 1238 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 CNOT6LQ96LI5 555 aaKnown RBP20.48■□□□□ 0.87
CLN3-206ENST00000360019 DNAH12Q6ZR08 3092 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 CBFA2T2O43439 604 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 DUSP11O75319 330 aaKnown RBP20.48■□□□□ 0.87
CLN3-206ENST00000360019 CPT1AP50416 773 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 SMTNP53814 917 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 SPC24Q8NBT2 197 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 SLC17A8Q8NDX2 589 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 ZBTB10Q96DT7 871 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 ERO1AQ96HE7 468 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 AP5M1Q9H0R1 490 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 KMT5AQ9NQR1 393 aa20.48■□□□□ 0.87
CLN3-206ENST00000360019 F2P00734 622 aa20.47■□□□□ 0.87
CLN3-206ENST00000360019 GNRH1P01148 92 aa20.47■□□□□ 0.87
CLN3-206ENST00000360019 BEX3Q00994 111 aa20.47■□□□□ 0.87
CLN3-206ENST00000360019 ZNF484Q5JVG2 852 aa20.47■□□□□ 0.87
CLN3-206ENST00000360019 CREBRFQ8IUR6 639 aa20.47■□□□□ 0.87
CLN3-206ENST00000360019 LRRC71Q8N4P6 559 aa20.47■□□□□ 0.87
CLN3-206ENST00000360019 KAT2BQ92831 832 aa20.47■□□□□ 0.87
CLN3-206ENST00000360019 IFT74Q96LB3 600 aa20.47■□□□□ 0.87
CLN3-206ENST00000360019 CTAGE1Q96RT6 745 aa20.47■□□□□ 0.87
CLN3-206ENST00000360019 TAB2Q9NYJ8 693 aa20.47■□□□□ 0.87
CLN3-206ENST00000360019 SEPT4O43236 478 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 CALUO43852 315 aaPredicted RBP20.46■□□□□ 0.87
CLN3-206ENST00000360019 ADCY3O60266 1144 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 C22orf31O95567 290 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 PRKAR2AP13861 404 aaKnown RBP20.46■□□□□ 0.87
CLN3-206ENST00000360019 COPB1P53618 953 aaKnown RBP20.46■□□□□ 0.87
CLN3-206ENST00000360019 IGBP1P78318 339 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 NR1I3Q14994 352 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 EXOC8Q8IYI6 725 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 SUGCTQ9HAC7 445 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 ARHGAP28Q9P2N2 729 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms