RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 UBE2Q2LH0YL09 131 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 CTDNEP1O95476 244 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 ECE1P42892 770 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 CXCL9Q07325 125 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 METTL16Q86W50 562 aaKnown RBP16.05■□□□□ 0.16
COL17A1-201ENST00000353479 AFAP1L2Q8N4X5 818 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 BPIFA3Q9BQP9 254 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 CCSER1Q9C0I3 900 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 FBXO28Q9NVF7 368 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 RUNDC3BQ96NL0 473 aa16.05■□□□□ 0.16
COL17A1-201ENST00000353479 TRIM49P0CI25 452 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 TRIM49CP0CI26 452 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 YWHAGP61981 247 aaKnown RBP eCLIP16.04■□□□□ 0.16
COL17A1-201ENST00000353479 NBPF9Q3BBW0 867 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 SARM1Q6SZW1 724 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 CCDC13Q8IYE1 715 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.04■□□□□ 0.16
COL17A1-201ENST00000353479 MCF2LO15068 1137 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 THEM5Q8N1Q8 247 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 ZMYND12Q9H0C1 365 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 SAT1P21673 171 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 GPD1LQ8N335 351 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 MICALL1Q8N3F8 863 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 GPRC5AQ8NFJ5 357 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 TMEM143Q96AN5 459 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 RBAKQ9NYW8 714 aaPredicted RBP16.04■□□□□ 0.16
COL17A1-201ENST00000353479 AGO2Q9UKV8 859 aaKnown RBP16.04■□□□□ 0.16
COL17A1-201ENST00000353479 XKR3Q5GH77 459 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 CEP57Q86XR8 500 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 RPUSD2Q8IZ73 545 aaKnown RBP16.04■□□□□ 0.16
COL17A1-201ENST00000353479 BBS5Q8N3I7 341 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 TRIM9Q9C026 710 aa16.04■□□□□ 0.16
COL17A1-201ENST00000353479 SLC25A27O95847 323 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 IL1R1P14778 569 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 C2orf54Q08AI8 447 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.03■□□□□ 0.16
COL17A1-201ENST00000353479 ADAM22Q9P0K1 906 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 SUCLA2Q9P2R7 463 aaPredicted RBP16.03■□□□□ 0.16
COL17A1-201ENST00000353479 ACTN1P12814 892 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 TROAPQ12815 778 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 INTS2Q9H0H0 1204 aaKnown RBP16.03■□□□□ 0.16
COL17A1-201ENST00000353479 ZWILCHQ9H900 591 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 PFDN4Q9NQP4 134 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 ABHD10Q9NUJ1 306 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 JRKLQ9Y4A0 524 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 DAAM1Q9Y4D1 1078 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 EIF3CLB5ME19 914 aaKnown RBP16.03■□□□□ 0.16
COL17A1-201ENST00000353479 TBX3O15119 743 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 RYBPQ8N488 228 aaPredicted RBP16.03■□□□□ 0.16
COL17A1-201ENST00000353479 SEPT1Q8WYJ6 367 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 EIF3CQ99613 913 aaKnown RBP16.03■□□□□ 0.16
COL17A1-201ENST00000353479 ADARB2Q9NS39 739 aaKnown RBP16.03■□□□□ 0.16
COL17A1-201ENST00000353479 AFG3L2Q9Y4W6 797 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 PFASO15067 1338 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 C6orf222P0C671 652 aaPredicted RBP16.03■□□□□ 0.16
COL17A1-201ENST00000353479 PSMA2P25787 234 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 SMARCA1P28370 1054 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 DARS2Q6PI48 645 aaKnown RBP16.03■□□□□ 0.16
COL17A1-201ENST00000353479 KIF9Q9HAQ2 790 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 NGRNQ9NPE2 291 aaKnown RBP16.03■□□□□ 0.16
COL17A1-201ENST00000353479 CPSF3Q9UKF6 684 aaKnown RBP16.03■□□□□ 0.16
COL17A1-201ENST00000353479 KCNH4Q9UQ05 1017 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 ZMYND10O75800 440 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 STX2P32856 288 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 SCINQ9Y6U3 715 aa16.03■□□□□ 0.16
COL17A1-201ENST00000353479 KRT39Q6A163 491 aa16.02■□□□□ 0.16
COL17A1-201ENST00000353479 MXRA8Q9BRK3 442 aa16.02■□□□□ 0.16
COL17A1-201ENST00000353479 DDTLA6NHG4 134 aaPredicted RBP16.02■□□□□ 0.16
COL17A1-201ENST00000353479 ECEL1O95672 775 aa16.02■□□□□ 0.16
COL17A1-201ENST00000353479 MAPK8IP2Q13387 824 aaPredicted RBP16.02■□□□□ 0.16
COL17A1-201ENST00000353479 ANKRD40Q6AI12 368 aa16.02■□□□□ 0.16
COL17A1-201ENST00000353479 DGAT1O75907 488 aa16.02■□□□□ 0.15
COL17A1-201ENST00000353479 HEXIM1O94992 359 aaKnown RBP16.02■□□□□ 0.15
COL17A1-201ENST00000353479 GH1P01241 217 aa16.02■□□□□ 0.15
COL17A1-201ENST00000353479 DDR1Q08345 913 aa16.02■□□□□ 0.15
COL17A1-201ENST00000353479 KCNB1Q14721 858 aa16.02■□□□□ 0.15
COL17A1-201ENST00000353479 TMEM35BQ8NCS4 154 aa16.02■□□□□ 0.15
COL17A1-201ENST00000353479 CHST13Q8NET6 341 aa16.02■□□□□ 0.15
COL17A1-201ENST00000353479 URGCPQ8TCY9 931 aa16.02■□□□□ 0.15
COL17A1-201ENST00000353479 HSPH1Q92598 858 aa16.02■□□□□ 0.15
COL17A1-201ENST00000353479 PBKQ96KB5 322 aa16.02■□□□□ 0.15
COL17A1-201ENST00000353479 PRKCBP05771 671 aa16.02■□□□□ 0.15
COL17A1-201ENST00000353479 SLC4A9Q96Q91 983 aa16.02■□□□□ 0.15
COL17A1-201ENST00000353479 SMARCAD1Q9H4L7 1026 aa16.02■□□□□ 0.15
COL17A1-201ENST00000353479 EPB41L5Q9HCM4 733 aa16.02■□□□□ 0.15
COL17A1-201ENST00000353479 POLIQ9UNA4 740 aa16.02■□□□□ 0.15
COL17A1-201ENST00000353479 MAGED2Q9UNF1 606 aaPredicted RBP16.02■□□□□ 0.15
COL17A1-201ENST00000353479 ZBBXA8MT70 800 aa16.01■□□□□ 0.15
COL17A1-201ENST00000353479 TEX33O43247 280 aa16.01■□□□□ 0.15
COL17A1-201ENST00000353479 EFNA5P52803 228 aa16.01■□□□□ 0.15
COL17A1-201ENST00000353479 LMBRD2Q68DH5 695 aaPredicted RBP16.01■□□□□ 0.15
COL17A1-201ENST00000353479 EMSYQ7Z589 1322 aa16.01■□□□□ 0.15
COL17A1-201ENST00000353479 SCN4BQ8IWT1 228 aa16.01■□□□□ 0.15
COL17A1-201ENST00000353479 DHX40Q8IX18 779 aaKnown RBP16.01■□□□□ 0.15
COL17A1-201ENST00000353479 RHOT2Q8IXI1 618 aa16.01■□□□□ 0.15
COL17A1-201ENST00000353479 TAAR1Q96RJ0 339 aa16.01■□□□□ 0.15
COL17A1-201ENST00000353479 REEP2Q9BRK0 252 aa16.01■□□□□ 0.15
COL17A1-201ENST00000353479 TMEM60Q9H2L4 133 aa16.01■□□□□ 0.15
COL17A1-201ENST00000353479 FAM217BQ9NTX9 383 aaPredicted RBP16.01■□□□□ 0.15
COL17A1-201ENST00000353479 CNOT8Q9UFF9 292 aaKnown RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms