RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 NIM1KQ8IY84 436 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 RDH13Q8NBN7 331 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 FAM204AQ9H8W3 233 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 HOMER2Q9NSB8 354 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 ZHX2Q9Y6X8 837 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 UBE4BO95155 1302 aa16.84■□□□□ 0.29
UPF3B-202ENST00000345865 LOXHD1Q8IVV2 1947 aa16.84■□□□□ 0.29
UPF3B-202ENST00000345865 F8VZ95 297 aa16.84■□□□□ 0.29
UPF3B-202ENST00000345865 PRPF38AQ8NAV1 312 aaKnown RBP16.84■□□□□ 0.29
UPF3B-202ENST00000345865 RUBCNQ92622 972 aa16.84■□□□□ 0.29
UPF3B-202ENST00000345865 TEPSINQ96N21 525 aa16.84■□□□□ 0.29
UPF3B-202ENST00000345865 RAVER2Q9HCJ3 691 aaKnown RBP16.84■□□□□ 0.29
UPF3B-202ENST00000345865 MYOZ2Q9NPC6 264 aa16.84■□□□□ 0.29
UPF3B-202ENST00000345865 TMEM150BA6NC51 233 aa16.84■□□□□ 0.29
UPF3B-202ENST00000345865 FLOT1O75955 427 aa16.84■□□□□ 0.29
UPF3B-202ENST00000345865 ALAS1P13196 640 aa16.84■□□□□ 0.29
UPF3B-202ENST00000345865 NOP2P46087 812 aaKnown RBP16.84■□□□□ 0.29
UPF3B-202ENST00000345865 DRAP1Q14919 205 aaPredicted RBP16.84■□□□□ 0.29
UPF3B-202ENST00000345865 TKFCQ3LXA3 575 aa16.84■□□□□ 0.29
UPF3B-202ENST00000345865 TSEN2Q8NCE0 465 aaKnown RBP16.84■□□□□ 0.29
UPF3B-202ENST00000345865 TPCN2Q8NHX9 752 aa16.84■□□□□ 0.29
UPF3B-202ENST00000345865 SLC30A5Q8TAD4 765 aa16.84■□□□□ 0.29
UPF3B-202ENST00000345865 AGO4Q9HCK5 861 aaKnown RBP16.84■□□□□ 0.29
UPF3B-202ENST00000345865 DNAJC12Q9UKB3 198 aa16.84■□□□□ 0.29
UPF3B-202ENST00000345865 BCS1LQ9Y276 419 aa16.84■□□□□ 0.29
UPF3B-202ENST00000345865 A0A0U1RQG5 324 aaPredicted RBP16.83■□□□□ 0.28
UPF3B-202ENST00000345865 ESYT3A0FGR9 886 aa16.83■□□□□ 0.28
UPF3B-202ENST00000345865 CCDC66A2RUB6 948 aa16.83■□□□□ 0.28
UPF3B-202ENST00000345865 PPP1R12BO60237 982 aaPredicted RBP16.83■□□□□ 0.28
UPF3B-202ENST00000345865 LRRN2O75325 713 aa16.83■□□□□ 0.28
UPF3B-202ENST00000345865 KIF4AO95239 1232 aa16.83■□□□□ 0.28
UPF3B-202ENST00000345865 SOX5P35711 763 aa16.83■□□□□ 0.28
UPF3B-202ENST00000345865 DLG4P78352 724 aa16.83■□□□□ 0.28
UPF3B-202ENST00000345865 SYTL5Q8TDW5 730 aaPredicted RBP16.83■□□□□ 0.28
UPF3B-202ENST00000345865 U2AF1L4Q8WU68 220 aaKnown RBP16.83■□□□□ 0.28
UPF3B-202ENST00000345865 FRMD4BQ9Y2L6 1034 aa16.83■□□□□ 0.28
UPF3B-202ENST00000345865 UBIAD1Q9Y5Z9 338 aa16.83■□□□□ 0.28
UPF3B-202ENST00000345865 FAM170AA1A519 330 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 KCNK3O14649 394 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 P4HBP07237 508 aaKnown RBP16.82■□□□□ 0.28
UPF3B-202ENST00000345865 FERP16591 822 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 STAT1P42224 750 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 CARSP49589 748 aaKnown RBP16.82■□□□□ 0.28
UPF3B-202ENST00000345865 TRADDQ15628 312 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 ZSWIM2Q8NEG5 633 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 LMO3Q8TAP4 145 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 TAAR1Q96RJ0 339 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 KRT12Q99456 494 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 SYT11Q9BT88 431 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 STK33Q9BYT3 514 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 PCIF1Q9H4Z3 704 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 K7ENM7 598 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 WDR46O15213 610 aaKnown RBP16.82■□□□□ 0.28
UPF3B-202ENST00000345865 H2AFZP0C0S5 128 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 TNFRSF8P28908 595 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 RARRES1P49788 294 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 GHRHRQ02643 423 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 BFSP1Q12934 665 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 RPS6KA1Q15418 735 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 GLE1Q53GS7 698 aaKnown RBP16.82■□□□□ 0.28
UPF3B-202ENST00000345865 PHLDB3Q6NSJ2 640 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 STXBP4Q6ZWJ1 553 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 H2AFVQ71UI9 128 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 SLC9A9Q8IVB4 645 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 GLYCTKQ8IVS8 523 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 SYCP3Q8IZU3 236 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 USP38Q8NB14 1042 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 NEK9Q8TD19 979 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 INTS2Q9H0H0 1204 aaKnown RBP16.82■□□□□ 0.28
UPF3B-202ENST00000345865 SLC38A10Q9HBR0 1119 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 GDF3Q9NR23 364 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 TMEM59LQ9UK28 342 aa16.82■□□□□ 0.28
UPF3B-202ENST00000345865 EXOC3O60645 756 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 ANXA13P27216 316 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 EPHB4P54760 987 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 GALCP54803 685 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 PPP2R5AQ15172 486 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 UGCGQ16739 394 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 PCNX4Q63HM2 1172 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 TRMT1LQ7Z2T5 733 aaKnown RBP16.81■□□□□ 0.28
UPF3B-202ENST00000345865 EPB41L5Q9HCM4 733 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 GOLGA6BA6NDN3 693 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 ATP9AO75110 1047 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 HEXIM1O94992 359 aaKnown RBP16.81■□□□□ 0.28
UPF3B-202ENST00000345865 FAM153BP0C7A2 387 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 EIF2AK2P19525 551 aaKnown RBP16.81■□□□□ 0.28
UPF3B-202ENST00000345865 RPS6P62753 249 aaKnown RBP16.81■□□□□ 0.28
UPF3B-202ENST00000345865 FAM153CQ494X1 144 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 NIPA1Q7RTP0 329 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 SLFN11Q7Z7L1 901 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 APEX2Q9UBZ4 518 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 RGS17Q9UGC6 210 aaPredicted RBP16.81■□□□□ 0.28
UPF3B-202ENST00000345865 FAM153AQ9UHL3 310 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 SAMM50Q9Y512 469 aa16.81■□□□□ 0.28
UPF3B-202ENST00000345865 ASTN2O75129 1339 aaPredicted RBP16.81■□□□□ 0.28
UPF3B-202ENST00000345865 CAPN2P17655 700 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 MYL7Q01449 175 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 GUCY2DQ02846 1103 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 MTMR1Q13613 665 aa16.8■□□□□ 0.28
UPF3B-202ENST00000345865 KCTD19Q17RG1 926 aaPredicted RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms