RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 TRIM69Q86WT6 500 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 MAGEB18Q96M61 343 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 ATP8A2Q9NTI2 1148 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 KRT7P08729 469 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 ART3Q13508 389 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 PPP2R5DQ14738 602 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 CCDC125Q86Z20 511 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 SLFN12Q8IYM2 578 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 BEST2Q8NFU1 509 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 S100ZQ8WXG8 99 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 SNAPC5O75971 98 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 AFPP02771 609 aaKnown RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 P4HA1P13674 534 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 ECE1P42892 770 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 RAP1GAPP47736 663 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 RGS21Q2M5E4 152 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 DCAF17Q5H9S7 520 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 RABGAP1LQ5R372 815 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 FAM173BQ6P4H8 233 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 LDHAL6AQ6ZMR3 332 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 RAB44Q7Z6P3 723 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 REXO1L1PQ8IX06 675 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 ZNF184Q99676 751 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 APOL4Q9BPW4 351 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 C1orf50Q9BV19 199 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 ZNF229Q9UJW7 825 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 GOLGA8IPA6NC78 632 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 H0Y3Z8 333 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 COPEO14579 308 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 ENC1O14682 589 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 JADE1Q6IE81 842 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 C4orf22Q6V702 233 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 CYFIP1Q7L576 1253 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 GOLPH3LQ9H4A5 285 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 PARVGQ9HBI0 331 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 TMBIM4Q9HC24 238 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 HMG20AQ9NP66 347 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 WARS2Q9UGM6 360 aaKnown RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 USP27XA6NNY8 438 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 TTLL1O95922 423 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 NPEPPSP55786 919 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 PDAP1Q13442 181 aaKnown RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 LACTB2Q53H82 288 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 ALKBH5Q6P6C2 394 aaKnown RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 GPR141Q7Z602 305 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 DGCR14Q96DF8 476 aaKnown RBP4.99□□□□□ -1.61
SCN1A-220ENST00000641603 FAM161BQ96MY7 647 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 OLFML3Q9NRN5 406 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 TBCCD1Q9NVR7 557 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 UBAP1Q9NZ09 502 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 A0A1W2PP64 1363 aa4.99□□□□□ -1.61
SCN1A-220ENST00000641603 EEF1B2P24534 225 aaKnown RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 CNGA2Q16280 664 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 OLFML2BQ68BL8 750 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 RNPEPL1Q9HAU8 725 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 PPARGC1AQ9UBK2 798 aaKnown RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 ZDHHC9Q9Y397 364 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 ACTL7BQ9Y614 415 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 PDS5AQ29RF7 1337 aaKnown RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 CLPTM1O96005 669 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 ZNF12P17014 697 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 NR1H2P55055 460 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 POLR2FP61218 127 aaKnown RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 HERC4Q5GLZ8 1057 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 STAG2Q8N3U4 1231 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 IL10P22301 178 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 GYS2P54840 703 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 ZNF174Q15697 407 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 DCUN1D2Q6PH85 259 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 BLIDQ8IZY5 108 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 KIFC2Q96AC6 838 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 NSL1Q96IY1 281 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 DNAJC7Q99615 494 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 ATG3Q9NT62 314 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 FAM8A1Q9UBU6 413 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 SERPINB9P50453 376 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 KRT72Q14CN4 511 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 MORF4L2Q15014 288 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 TRAPPC11Q7Z392 1133 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 NUDCD3Q8IVD9 361 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 RFFLQ8WZ73 363 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 EZH1Q92800 747 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 KLHL4Q9C0H6 718 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 COPRSQ9NQ92 184 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 SCP2P22307 547 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 ADARP55265 1226 aaKnown RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 BLMHQ13867 455 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 SGSM1Q2NKQ1 1148 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 ITPKCQ96DU7 683 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 MAGEB6P1A0A0J9YX57 407 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 VWA5AO00534 786 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 JAK2O60674 1132 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 OR52Z1P0C646 297 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 SRGAP2BP0DMP2 458 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 ADCY7P51828 1080 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 TBL3Q12788 808 aaKnown RBP4.98□□□□□ -1.61
SCN1A-220ENST00000641603 EPS8Q12929 822 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 PSMD6Q15008 389 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 AKNAD1Q5T1N1 836 aa4.98□□□□□ -1.61
SCN1A-220ENST00000641603 NANOGNBQ7Z5D8 188 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms