RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 NELFCDQ8IXH7 590 aa10.06□□□□□ -0.8
PDGFRA-208ENST00000509490 ZDHHC15Q96MV8 337 aa10.06□□□□□ -0.8
PDGFRA-208ENST00000509490 SPAG5Q96R06 1193 aa10.06□□□□□ -0.8
PDGFRA-208ENST00000509490 NAP1L3Q99457 506 aaPredicted RBP10.06□□□□□ -0.8
PDGFRA-208ENST00000509490 HSD17B14Q9BPX1 270 aa10.06□□□□□ -0.8
PDGFRA-208ENST00000509490 CNOT10Q9H9A5 744 aaKnown RBP10.06□□□□□ -0.8
PDGFRA-208ENST00000509490 ATRNL1Q5VV63 1379 aa10.06□□□□□ -0.8
PDGFRA-208ENST00000509490 A0A0G2JS52 829 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 NPHP3-ACAD11A0A0J9YXS1 232 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 CCDC172P0C7W6 258 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 HMGB2P26583 209 aaKnown RBP10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 SOX5P35711 763 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 KIF22Q14807 665 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 SMIM5Q71RC9 77 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 CERS5Q8N5B7 392 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 SH2D3CQ8N5H7 860 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 MORC4Q8TE76 937 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 IFT81Q8WYA0 676 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 GPR101Q96P66 508 aaPredicted RBP10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 FIZ1Q96SL8 496 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 P2RX7Q99572 595 aaKnown RBP10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 AMNQ9BXJ7 453 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 DEFB129Q9H1M3 183 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 VCPKMTQ9H867 229 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 PCDHA1Q9Y5I3 950 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 PFASO15067 1338 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 POTEFA5A3E0 1075 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 GOLGA6L10A6NI86 522 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 F8VZ95 297 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 MYO1FO00160 1098 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 P4HA2O15460 535 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 GGPS1O95749 300 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 POTEIP0CG38 1075 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 PSMC2P35998 433 aaKnown RBP10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 SMTNP53814 917 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 ACTN3Q08043 901 aaPredicted RBP10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 PPP2R5CQ13362 524 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 DHX34Q14147 1143 aaKnown RBP10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 C11orf63Q6NUN7 778 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 CDC42EP5Q6NZY7 148 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 POTEGQ6S5H5 508 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 POTEEQ6S8J3 1075 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 CCDC24Q8N4L8 307 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 LNX1Q8TBB1 728 aaPredicted RBP10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 MAGEC3Q8TD91 643 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 ATP8B4Q8TF62 1192 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 ZFP91Q96JP5 570 aaPredicted RBP10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 GPR88Q9GZN0 384 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 RAB17Q9H0T7 212 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 PLEKHA4Q9H4M7 779 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 CCDC134Q9H6E4 229 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 DNAJC18Q9H819 358 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 IGLV3-22A0A075B6J6 115 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 ESYT3A0FGR9 886 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 MAPK13O15264 365 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 MARCH6O60337 910 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 SERPINB2P05120 415 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 MAPTP10636 758 aaKnown RBP10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 GHRP10912 638 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 ACTN1P12814 892 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 KCNQ4P56696 695 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 PLS1Q14651 629 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 TNFAIP8L3Q5GJ75 292 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 DUPD1Q68J44 220 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 KCNV1Q6PIU1 500 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 B3GNT9Q6UX72 402 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 C1orf186Q6ZWK4 172 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 PEX26Q7Z412 305 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 SIAH1Q8IUQ4 282 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 C12orf56Q8IXR9 622 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 PGM2Q96G03 612 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 NEUROG2Q9H2A3 272 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 ZDHHC18Q9NUE0 388 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 CNOT7Q9UIV1 285 aaKnown RBP10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 ODF2LQ9ULJ1 636 aa10.05□□□□□ -0.8
PDGFRA-208ENST00000509490 GMNCA6NCL1 334 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 CEP104O60308 925 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 ONECUT3O60422 494 aaPredicted RBP10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 HNRNPH1P31943 449 aaKnown RBP10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 PPP2R2AP63151 447 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 CEP85LQ5SZL2 805 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 KCNQ5Q9NR82 932 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 USP40Q9NVE5 1235 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 AJAP1Q9UKB5 411 aaPredicted RBP10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 AMFRQ9UKV5 643 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 USP17L15C9J2P7 530 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 USP17L13C9JLJ4 530 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 USP17L11C9JVI0 530 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 USP17L18D6R9N7 530 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 USP17L22D6RA61 530 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 USP17L17D6RBQ6 530 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 USP17L19D6RCP7 530 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 USP17L20D6RJB6 530 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 MSH4O15457 936 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 RASSF9O75901 435 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 KIAA0754O94854 1291 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 ALAS1P13196 640 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 GUCY2FP51841 1108 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 GSCP56915 257 aaPredicted RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms