RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 KIF20AO95235 890 aa13.75□□□□□ -0.21
CHMP3-204ENST00000409727 POLGP54098 1239 aaPredicted RBP13.75□□□□□ -0.21
CHMP3-204ENST00000409727 FCGRTP55899 365 aa13.75□□□□□ -0.21
CHMP3-204ENST00000409727 KRT31Q15323 416 aa13.75□□□□□ -0.21
CHMP3-204ENST00000409727 EPM2AIP1Q7L775 607 aaPredicted RBP13.75□□□□□ -0.21
CHMP3-204ENST00000409727 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.75□□□□□ -0.21
CHMP3-204ENST00000409727 FILIP1Q7Z7B0 1213 aa13.75□□□□□ -0.21
CHMP3-204ENST00000409727 IRF2BP1Q8IU81 584 aa13.75□□□□□ -0.21
CHMP3-204ENST00000409727 AFG1LQ8WV93 481 aa13.75□□□□□ -0.21
CHMP3-204ENST00000409727 SOCS4Q8WXH5 440 aa13.75□□□□□ -0.21
CHMP3-204ENST00000409727 USP6NLQ92738 828 aa13.75□□□□□ -0.21
CHMP3-204ENST00000409727 DRC1Q96MC2 740 aa13.75□□□□□ -0.21
CHMP3-204ENST00000409727 IKZF4Q9H2S9 585 aa13.75□□□□□ -0.21
CHMP3-204ENST00000409727 THAP9Q9H5L6 903 aa13.75□□□□□ -0.21
CHMP3-204ENST00000409727 INTS13Q9NVM9 706 aa13.75□□□□□ -0.21
CHMP3-204ENST00000409727 ZSWIM8A7E2V4 1837 aa13.75□□□□□ -0.21
CHMP3-204ENST00000409727 RBM47A0AV96 593 aaKnown RBP13.74□□□□□ -0.21
CHMP3-204ENST00000409727 ADCY6O43306 1168 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 TRPA1O75762 1119 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 PLS3P13797 630 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 CDC25BP30305 580 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 HOXD13P35453 343 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 PEX3P56589 373 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 LACTBP83111 547 aaPredicted RBP13.74□□□□□ -0.21
CHMP3-204ENST00000409727 LRRC63Q05C16 580 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 LAMC2Q13753 1193 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 KNOP1Q1ED39 458 aaKnown RBP13.74□□□□□ -0.21
CHMP3-204ENST00000409727 ZNF720Q7Z2F6 126 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 TMC6Q7Z403 805 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 ANKRD20A12PQ8NF67 263 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 AFAP1L1Q8TED9 768 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 LENG1Q96BZ8 264 aaPredicted RBP13.74□□□□□ -0.21
CHMP3-204ENST00000409727 ZNF830Q96NB3 372 aaPredicted RBP13.74□□□□□ -0.21
CHMP3-204ENST00000409727 FIZ1Q96SL8 496 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 APBA2Q99767 749 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 VPS16Q9H269 839 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 KCTD10Q9H3F6 313 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 ATP6V0A4Q9HBG4 840 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 NRBP2Q9NSY0 501 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 LARSQ9P2J5 1176 aaKnown RBP13.74□□□□□ -0.21
CHMP3-204ENST00000409727 SEL1LQ9UBV2 794 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 CCDC169A6NNP5 214 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 PES1O00541 588 aaKnown RBP13.74□□□□□ -0.21
CHMP3-204ENST00000409727 DGAT1O75907 488 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 HOXC6P09630 235 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 ZNF286BP0CG31 522 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 TNFAIP2Q03169 654 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 EMC2Q15006 297 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 APTXQ7Z2E3 356 aaKnown RBP13.74□□□□□ -0.21
CHMP3-204ENST00000409727 MSL3Q8N5Y2 521 aaKnown RBP13.74□□□□□ -0.21
CHMP3-204ENST00000409727 OR6J1Q8NGC5 347 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 TMEM143Q96AN5 459 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 CNOT6LQ96LI5 555 aaKnown RBP13.74□□□□□ -0.21
CHMP3-204ENST00000409727 KIFC3Q9BVG8 833 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 GABRQQ9UN88 632 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 TRPC6Q9Y210 931 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 MYH11P35749 1972 aa13.74□□□□□ -0.21
CHMP3-204ENST00000409727 ARID2Q68CP9 1835 aa13.73□□□□□ -0.21
CHMP3-204ENST00000409727 GOLGA6L6A8MZA4 724 aa13.73□□□□□ -0.21
CHMP3-204ENST00000409727 SLC16A4O15374 487 aa13.73□□□□□ -0.21
CHMP3-204ENST00000409727 LGR5O75473 907 aa13.73□□□□□ -0.21
CHMP3-204ENST00000409727 TPM3P06753 285 aa13.73□□□□□ -0.21
CHMP3-204ENST00000409727 VEGFBP49765 207 aa13.73□□□□□ -0.21
CHMP3-204ENST00000409727 SPAG1Q07617 926 aa13.73□□□□□ -0.21
CHMP3-204ENST00000409727 DUSP28Q4G0W2 176 aa13.73□□□□□ -0.21
CHMP3-204ENST00000409727 ZCWPW2Q504Y3 356 aa13.73□□□□□ -0.21
CHMP3-204ENST00000409727 CCDC186Q7Z3E2 898 aa13.73□□□□□ -0.21
CHMP3-204ENST00000409727 PPTC7Q8NI37 304 aa13.73□□□□□ -0.21
CHMP3-204ENST00000409727 ZNF507Q8TCN5 953 aa13.73□□□□□ -0.21
CHMP3-204ENST00000409727 NOC3LQ8WTT2 800 aaKnown RBP13.73□□□□□ -0.21
CHMP3-204ENST00000409727 CTAGE1Q96RT6 745 aa13.73□□□□□ -0.21
CHMP3-204ENST00000409727 TIPINQ9BVW5 301 aa13.73□□□□□ -0.21
CHMP3-204ENST00000409727 NIFKQ9BYG3 293 aaKnown RBP13.73□□□□□ -0.21
CHMP3-204ENST00000409727 POLR3FQ9H1D9 316 aaPredicted RBP13.73□□□□□ -0.21
CHMP3-204ENST00000409727 XPNPEP1Q9NQW7 623 aa13.73□□□□□ -0.21
CHMP3-204ENST00000409727 LIMA1Q9UHB6 759 aaKnown RBP13.73□□□□□ -0.21
CHMP3-204ENST00000409727 A0A1B0GTH6 734 aa13.72□□□□□ -0.21
CHMP3-204ENST00000409727 N4BP3O15049 544 aa13.72□□□□□ -0.21
CHMP3-204ENST00000409727 NKRFO15226 690 aaKnown RBP eCLIP13.72□□□□□ -0.21
CHMP3-204ENST00000409727 TEX33O43247 280 aa13.72□□□□□ -0.21
CHMP3-204ENST00000409727 LGALS2P05162 132 aa13.72□□□□□ -0.21
CHMP3-204ENST00000409727 PRKCSHP14314 528 aaPredicted RBP13.72□□□□□ -0.21
CHMP3-204ENST00000409727 MTIF2P46199 727 aaKnown RBP13.72□□□□□ -0.21
CHMP3-204ENST00000409727 COPB1P53618 953 aaKnown RBP13.72□□□□□ -0.21
CHMP3-204ENST00000409727 DMP1Q13316 513 aaPredicted RBP13.72□□□□□ -0.21
CHMP3-204ENST00000409727 PLCB4Q15147 1175 aa13.72□□□□□ -0.21
CHMP3-204ENST00000409727 FILIP1LQ4L180 1135 aa13.72□□□□□ -0.21
CHMP3-204ENST00000409727 IQSEC1Q6DN90 963 aa13.72□□□□□ -0.21
CHMP3-204ENST00000409727 LRRC55Q6ZSA7 311 aa13.72□□□□□ -0.21
CHMP3-204ENST00000409727 STXBP4Q6ZWJ1 553 aa13.72□□□□□ -0.21
CHMP3-204ENST00000409727 FAM114A1Q8IWE2 563 aa13.72□□□□□ -0.21
CHMP3-204ENST00000409727 MCPH1Q8NEM0 835 aa13.72□□□□□ -0.21
CHMP3-204ENST00000409727 SLC7A3Q8WY07 619 aa13.72□□□□□ -0.21
CHMP3-204ENST00000409727 BSNDQ8WZ55 320 aa13.72□□□□□ -0.21
CHMP3-204ENST00000409727 SMARCAD1Q9H4L7 1026 aa13.72□□□□□ -0.21
CHMP3-204ENST00000409727 EMSYQ7Z589 1322 aa13.72□□□□□ -0.21
CHMP3-204ENST00000409727 CLIC2O15247 247 aa13.72□□□□□ -0.21
CHMP3-204ENST00000409727 EIF3DO15371 548 aaKnown RBP eCLIP13.72□□□□□ -0.21
CHMP3-204ENST00000409727 DYNC1LI2O43237 492 aaPredicted RBP13.72□□□□□ -0.21
CHMP3-204ENST00000409727 FGFR1OPO95684 399 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms