RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 SELENOOQ9BVL4 669 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MYH14Q7Z406 1995 aaKnown RBP11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MED24O75448 989 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 FOSP01100 380 aaPredicted RBP11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 EIF4A3P38919 411 aaKnown RBP11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 Q3C1V9 767 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 DCAF15Q66K64 600 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PLA2G4FQ68DD2 849 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 LMBRD2Q68DH5 695 aaPredicted RBP11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 RAD9BQ6WBX8 426 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 EIF2AK1Q9BQI3 630 aaKnown RBP11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 GLT8D2Q9H1C3 349 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 TPX2Q9ULW0 747 aaKnown RBP11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 KDM3AQ9Y4C1 1321 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 LRRD1A4D1F6 860 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PPP1R11O60927 126 aaPredicted RBP11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SOX10P56693 466 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 GRB10Q13322 594 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MTMR1Q13613 665 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 STYK1Q6J9G0 422 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 RUFY4Q6ZNE9 571 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SH3BP5LQ7L8J4 393 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 KIRREL3Q8IZU9 778 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 IFT74Q96LB3 600 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 HAUS4Q9H6D7 363 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 CHORDC1Q9UHD1 332 aaPredicted RBP11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 L1RE1Q9UN81 338 aa11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PACSIN2Q9UNF0 486 aaPredicted RBP11.68□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 FTCDO95954 541 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 TNNI1P19237 187 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PAX7P23759 505 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PSMD2Q13200 908 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 KIAA0753Q2KHM9 967 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SLC9C1Q4G0N8 1177 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SFMBT2Q5VUG0 894 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 CAPRIN2Q6IMN6 1127 aaKnown RBP11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 REXO1L1PQ8IX06 675 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 TC2NQ8N9U0 490 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 COG1Q8WTW3 980 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 FAM151AQ8WW52 585 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 CCDC51Q96ER9 411 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 THOC1Q96FV9 657 aaKnown RBP11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 DNAJC18Q9H819 358 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MLXIPQ9HAP2 919 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 COL4A3BPQ9Y5P4 624 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 LRP6O75581 1613 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 GFPT2O94808 682 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MOCS3O95396 460 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MYBP10242 640 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 ARP10275 920 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 ASIC2Q16515 512 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 GRIPAP1Q4V328 841 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 CATSPER3Q86XQ3 398 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PARP9Q8IXQ6 854 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PROCA1Q8NCQ7 364 aaPredicted RBP11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PPP1R13LQ8WUF5 828 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 HNRNPLLQ8WVV9 542 aaKnown RBP11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 LXNQ9BS40 222 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 GOLPH3Q9H4A6 298 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 FAM86B1E9PN63 330 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SLC16A4O15374 487 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 FAM86B2P0C5J1 330 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PDXDC2PQ6P474 469 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 ADSSL1Q8N142 457 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 DHTKD1Q96HY7 919 aaPredicted RBP11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MTRQ99707 1265 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 BCAS3Q9H6U6 928 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 ELP3Q9H9T3 547 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 ABHD10Q9NUJ1 306 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 ADD3Q9UEY8 706 aaKnown RBP11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 FAM184BQ9ULE4 1060 aa11.67□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 COL14A1Q05707 1796 aaKnown RBP11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 HNRNPDLO14979 420 aaKnown RBP11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 GYPCP04921 128 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 JAG1P78504 1218 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 GFPT1Q06210 699 aaPredicted RBP11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 EHHADHQ08426 723 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MKRN4PQ13434 485 aaPredicted RBP11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 TRIM14Q14142 442 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 GNPTABQ3T906 1256 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 CCDC38Q502W7 563 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 MOB2Q70IA6 237 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 UNC13DQ70J99 1090 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 PNKPQ96T60 521 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 REEP2Q9BRK0 252 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 WDR11Q9BZH6 1224 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 GPRC5CQ9NQ84 441 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SMARCAL1Q9NZC9 954 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 NYAP2Q9P242 653 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 LRRC53A6NM62 1247 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 NDUFA10O95299 355 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 NPY5RQ15761 445 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 EXOC3L4Q17RC7 722 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 FNBP1Q96RU3 617 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 TRIM4Q9C037 500 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 VCPKMTQ9H867 229 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 NHEJ1Q9H9Q4 299 aaPredicted RBP11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 DUSP10Q9Y6W6 482 aa11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 CALUO43852 315 aaPredicted RBP11.66□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 SEPT7Q16181 437 aaKnown RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms