RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 TATDN1Q6P1N9 297 aa7.75□□□□□ -1.17
PRPF40A-210ENST00000489741 TMED8Q6PL24 325 aaPredicted RBP7.75□□□□□ -1.17
PRPF40A-210ENST00000489741 MAPKAPK5Q8IW41 473 aa7.75□□□□□ -1.17
PRPF40A-210ENST00000489741 PLD6Q8N2A8 252 aaKnown RBP7.75□□□□□ -1.17
PRPF40A-210ENST00000489741 NETO1Q8TDF5 533 aa7.75□□□□□ -1.17
PRPF40A-210ENST00000489741 AS3MTQ9HBK9 375 aa7.75□□□□□ -1.17
PRPF40A-210ENST00000489741 TXNRD2Q9NNW7 524 aa7.75□□□□□ -1.17
PRPF40A-210ENST00000489741 PALD1Q9ULE6 856 aa7.75□□□□□ -1.17
PRPF40A-210ENST00000489741 NR2E3Q9Y5X4 410 aa7.75□□□□□ -1.17
PRPF40A-210ENST00000489741 RPTORQ8N122 1335 aa7.75□□□□□ -1.17
PRPF40A-210ENST00000489741 PHIPQ8WWQ0 1821 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 PEX10O60683 326 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 TFE3P19532 575 aaPredicted RBP7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 ITIH2P19823 946 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 CYP7A1P22680 504 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 HERVK_113P62684 666 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 DYNLL1P63167 89 aaKnown RBP7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 MCTP1Q6DN14 999 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 CEP85Q6P2H3 762 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 ABI1Q8IZP0 508 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 STK11IPQ8N1F8 1099 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 GPRC5AQ8NFJ5 357 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 DIS3LQ8TF46 1054 aaKnown RBP7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 TRIB2Q92519 343 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 PAWRQ96IZ0 340 aaKnown RBP7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 NOL10Q9BSC4 688 aaKnown RBP7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 WNT10AQ9GZT5 417 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 CCDC8Q9H0W5 538 aaPredicted RBP7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 GTF2IRD1Q9UHL9 959 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 OGDHLQ9ULD0 1010 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 ZBTB21Q9ULJ3 1066 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 SLC5A6Q9Y289 635 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 TLR6Q9Y2C9 796 aa7.74□□□□□ -1.17
PRPF40A-210ENST00000489741 A0A1W2PPC1 479 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 CNMDO75829 334 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 LRIG2O94898 1065 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 CEACAM5P06731 702 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 BMP8BP34820 402 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 IRX3P78415 501 aaPredicted RBP7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 TMCO4Q5TGY1 634 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 NECAB2Q7Z6G3 386 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 CERS3Q8IU89 383 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 GIPC2Q8TF65 315 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 BCL7CQ8WUZ0 217 aaPredicted RBP7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 MISP3Q96FF7 219 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 C12orf42Q96LP6 360 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 GDF15Q99988 308 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 RIOK1Q9BRS2 568 aaKnown RBP7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 BCL11AQ9H165 835 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 ANTXR1Q9H6X2 564 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 FBRSQ9HAH7 460 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 TMOD4Q9NZQ9 345 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 SAP30BPQ9UHR5 308 aaKnown RBP7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 U3KQE9 123 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 MYH13Q9UKX3 1938 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 DNAH12Q6ZR08 3092 aa7.73□□□□□ -1.17
PRPF40A-210ENST00000489741 LAMA2P24043 3122 aaKnown RBP7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 AK9Q5TCS8 1911 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 GH2P01242 217 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 HLA-DOAP06340 250 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 COL6A1P12109 1028 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 CYP2B6P20813 491 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 MAPK4P31152 587 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 GUCY1A2P33402 732 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 PLCD1P51178 756 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 GABPAQ06546 454 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 CACNB2Q08289 660 aaPredicted RBP7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 OS9Q13438 667 aaPredicted RBP7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 IFI16Q16666 785 aaKnown RBP7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 TSNAXIP1Q2TAA8 658 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 LBX2Q6XYB7 198 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 NFXL1Q6ZNB6 911 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 CATSPERGQ6ZRH7 1159 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 CRACR2BQ8N4Y2 399 aaPredicted RBP7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 MIGA1Q8NAN2 632 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 AGBL5Q8NDL9 886 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 PHC3Q8NDX5 983 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 FOXQ1Q9C009 403 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 KIAA1683Q9H0B3 1180 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 PORCNQ9H237 461 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 MKNK2Q9HBH9 465 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 STAP2Q9UGK3 403 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 SERPINB13Q9UIV8 391 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 RABGAP1Q9Y3P9 1069 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 DOCK2Q92608 1830 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 DOCK3Q8IZD9 2030 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 PTPRFP10586 1907 aa7.72□□□□□ -1.17
PRPF40A-210ENST00000489741 DOCK1Q14185 1865 aa7.71□□□□□ -1.18
PRPF40A-210ENST00000489741 IDH1O75874 414 aaKnown RBP7.71□□□□□ -1.18
PRPF40A-210ENST00000489741 SHMT1P34896 483 aa7.71□□□□□ -1.18
PRPF40A-210ENST00000489741 OXCT1P55809 520 aa7.71□□□□□ -1.18
PRPF40A-210ENST00000489741 MAP3K12Q12852 859 aa7.71□□□□□ -1.18
PRPF40A-210ENST00000489741 ZNF574Q6ZN55 896 aaPredicted RBP7.71□□□□□ -1.18
PRPF40A-210ENST00000489741 GPR142Q7Z601 462 aa7.71□□□□□ -1.18
PRPF40A-210ENST00000489741 PLEKHH3Q7Z736 793 aa7.71□□□□□ -1.18
PRPF40A-210ENST00000489741 TTC6Q86TZ1 520 aa7.71□□□□□ -1.18
PRPF40A-210ENST00000489741 HID1Q8IV36 788 aa7.71□□□□□ -1.18
PRPF40A-210ENST00000489741 ITPRIPQ8IWB1 547 aa7.71□□□□□ -1.18
PRPF40A-210ENST00000489741 SIRT2Q8IXJ6 389 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms