RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 BDP1A6H8Y1 2624 aa13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 IGKV6D-21A0A0A0MT36 114 aa13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 FAM86B1E9PN63 330 aa13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 C5orf67F2Z3F1 127 aa13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 BACH1O14867 736 aa13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 ADAMTS3O15072 1205 aa13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 ATG7O95352 703 aa13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 FAM86B2P0C5J1 330 aa13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 SCG2P13521 617 aa13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 IL9P15248 144 aa13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 ADD1P35611 737 aaKnown RBP13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 BTG3Q14201 252 aaPredicted RBP13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 MTHFD1LQ6UB35 978 aa13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 PLA2G4DQ86XP0 818 aa13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 KHSRPQ92945 711 aaKnown RBP eCLIP13.14□□□□□ -0.311e-21■■■□□ 18.6
HMGCS1-204ENST00000507293 KCNB2Q92953 911 aa13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 BRF1Q92994 677 aa13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 ZNF689Q96CS4 500 aaPredicted RBP13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 UIMC1Q96RL1 719 aa13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 CELF4Q9BZC1 486 aaKnown RBP13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 NID2Q14112 1375 aa13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 FNDC1Q4ZHG4 1894 aaPredicted RBP13.14□□□□□ -0.31
HMGCS1-204ENST00000507293 IGSF9BQ9UPX0 1349 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 MYO7AQ13402 2215 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 IGLV3-22A0A075B6J6 115 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 CCDC196A0A1B0GTZ2 297 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 SMIM35A0A1B0GVV1 85 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 ESYT2A0FGR8 921 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 H3BQ06 376 aaPredicted RBP13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 GRM6O15303 877 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 DGKIO75912 1065 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 RB1P06400 928 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 HSPA4P34932 840 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 BMPR1AP36894 532 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 SLC26A2P50443 739 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 PAK2Q13177 524 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 FAM160B1Q5W0V3 765 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 PTCRAQ6ISU1 281 aaPredicted RBP13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 BLOC1S2Q6QNY1 142 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 ABHD15Q6UXT9 468 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 EP400NLQ6ZTU2 488 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 RTN4RL1Q86UN2 441 aaPredicted RBP13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 CCDC60Q8IWA6 550 aaPredicted RBP13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 NEK9Q8TD19 979 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 CRYGNQ8WXF5 182 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 C11orf84Q9BUA3 381 aaPredicted RBP13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 FTHL17Q9BXU8 183 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 CD320Q9NPF0 282 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 PADI3Q9ULW8 664 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 RWDD3Q9Y3V2 267 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 SNX14Q9Y5W7 946 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 SQORQ9Y6N5 450 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 MUC3AQ02505 3323 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 KDM3AQ9Y4C1 1321 aa13.13□□□□□ -0.31
HMGCS1-204ENST00000507293 COL1A2P08123 1366 aa13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 IPO5O00410 1097 aaKnown RBP13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 HBP1O60381 514 aa13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 CSPG5O95196 566 aa13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 CYP3A4P08684 503 aa13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 KLRC1P26715 233 aa13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 KRT76Q01546 638 aa13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 PKN1Q16512 942 aa13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 MIS18BP1Q6P0N0 1132 aa13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 NPAS4Q8IUM7 802 aa13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 REXO1Q8N1G1 1221 aaKnown RBP13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 ATP8B4Q8TF62 1192 aa13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 CLP1Q92989 425 aaKnown RBP13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 PABPC5Q96DU9 382 aaKnown RBP13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 ZMYND12Q9H0C1 365 aa13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 LMAN2LQ9H0V9 348 aa13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 C6orf50Q9HD87 102 aa13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 ZNF302Q9NR11 478 aa13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 MRPL42Q9Y6G3 142 aaKnown RBP13.12□□□□□ -0.31
HMGCS1-204ENST00000507293 GRXCR2A6NFK2 248 aa13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 DHX15O43143 795 aaKnown RBP13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 IBSPP21815 317 aaPredicted RBP13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 RPS6KB1P23443 525 aa13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 SETQ01105 290 aaPredicted RBP13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 COL19A1Q14993 1142 aa13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 TMEM266Q2M3C6 531 aa13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 PUS10Q3MIT2 529 aaKnown RBP13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 PAN2Q504Q3 1202 aaKnown RBP13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 SWSAP1Q6NVH7 229 aa13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 PDXDC2PQ6P474 469 aa13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 FAM178BQ8IXR5 827 aa13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 CMTR2Q8IYT2 770 aaKnown RBP13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 CRIPAKQ8N1N5 446 aa13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 NME8Q8N427 588 aa13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 RASGRP4Q8TDF6 673 aa13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 CCDC12Q8WUD4 166 aaPredicted RBP13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 PHKBQ93100 1093 aa13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 ZNF577Q9BSK1 485 aa13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 TMX1Q9H3N1 280 aa13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 CLDND1Q9NY35 253 aa13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 GINS2Q9Y248 185 aa13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 XIRP2A4UGR9 3374 aa13.11□□□□□ -0.31
HMGCS1-204ENST00000507293 PRPF3O43395 683 aaKnown RBP13.1□□□□□ -0.31
HMGCS1-204ENST00000507293 PPFIA3O75145 1194 aa13.1□□□□□ -0.31
HMGCS1-204ENST00000507293 MMP1P03956 469 aa13.1□□□□□ -0.31
HMGCS1-204ENST00000507293 STAG3L1P0CL83 205 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms