RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 TLR2O60603 784 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 TBCAO75347 108 aaKnown RBP9.21□□□□□ -0.94
CD44-208ENST00000428726 FAM13AO94988 1023 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 LONRF2Q1L5Z9 754 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 ODR4Q5SWX8 454 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 TAF3Q5VWG9 929 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 CYFIP1Q7L576 1253 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 CCDC65Q8IXS2 484 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 C7orf43Q8WVR3 580 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 IFT81Q8WYA0 676 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 CCDC17Q96LX7 622 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 TSG101Q99816 390 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 TRIM31Q9BZY9 425 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 COL4A3BPQ9Y5P4 624 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 BRWD3Q6RI45 1802 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 EFCAB8A8MWE9 144 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 CAPN2P17655 700 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 FXR2P51116 673 aaKnown RBP eCLIP9.2□□□□□ -0.94
CD44-208ENST00000428726 HMGCS2P54868 508 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 DLG4P78352 724 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 FSTL1Q12841 308 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 PRPF4BQ13523 1007 aaKnown RBP9.2□□□□□ -0.94
CD44-208ENST00000428726 KLHL7Q8IXQ5 586 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 JDP2Q8WYK2 163 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 UNC45AQ9H3U1 944 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 TMEM51Q9NW97 253 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 PCDHA13Q9Y5I0 950 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 ANKRD31Q8N7Z5 1873 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 GCOM1H8Y6P7 765 aaPredicted RBP9.2□□□□□ -0.94
CD44-208ENST00000428726 SLITRK3O94933 977 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 POLR2MP0CAP2 368 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 ITGB5P18084 799 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 KCNA3P22001 575 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 KIAA0753Q2KHM9 967 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 SRGAP1Q7Z6B7 1085 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 MICALL2Q8IY33 904 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 NLGN2Q8NFZ4 835 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 KAT5Q92993 513 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 SAAL1Q96ER3 474 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 CCDC43Q96MW1 224 aaKnown RBP9.2□□□□□ -0.94
CD44-208ENST00000428726 CENPHQ9H3R5 247 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 HAUS4Q9H6D7 363 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 ARHGEF10LQ9HCE6 1279 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 NYAP2Q9P242 653 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 HDAC9Q9UKV0 1011 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 MYH7BA7E2Y1 1941 aa9.2□□□□□ -0.94
CD44-208ENST00000428726 A0A1W2PQC6 194 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 CCDC169A6NNP5 214 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 KLRC1P26715 233 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 FKBP3Q00688 224 aaKnown RBP9.19□□□□□ -0.94
CD44-208ENST00000428726 ZNF772Q68DY9 489 aaPredicted RBP9.19□□□□□ -0.94
CD44-208ENST00000428726 TATDN1Q6P1N9 297 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 ETNPPLQ8TBG4 499 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 ATG4CQ96DT6 458 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 AP1M1Q9BXS5 423 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 TCEAL9Q9UHQ7 104 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 DMGDHQ9UI17 866 aaKnown RBP9.19□□□□□ -0.94
CD44-208ENST00000428726 SERPINA10Q9UK55 444 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 SAR1BQ9Y6B6 198 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 CCDC66A2RUB6 948 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 ATMINO43313 823 aaPredicted RBP9.19□□□□□ -0.94
CD44-208ENST00000428726 ZRANB2O95218 330 aaKnown RBP eCLIP9.19□□□□□ -0.94
CD44-208ENST00000428726 CYP3A4P08684 503 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 GUCY2FP51841 1108 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 SLC12A3P55017 1021 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 ZBED6P86452 979 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 SPIRE1Q08AE8 756 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 KLHL30Q0D2K2 578 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 MAN2A1Q16706 1144 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 UGCGQ16739 394 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 CDR2LQ86X02 465 aaPredicted RBP9.19□□□□□ -0.94
CD44-208ENST00000428726 CPNE8Q86YQ8 564 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 FAM114A1Q8IWE2 563 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 SECISBP2LQ93073 1101 aaKnown RBP9.19□□□□□ -0.94
CD44-208ENST00000428726 LXNQ9BS40 222 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 LRRC1Q9BTT6 524 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 STK17AQ9UEE5 414 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 SIK3Q9Y2K2 1263 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 ZHX2Q9Y6X8 837 aa9.19□□□□□ -0.94
CD44-208ENST00000428726 IPO5O00410 1097 aaKnown RBP9.18□□□□□ -0.94
CD44-208ENST00000428726 NOL4O94818 638 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 NF2P35240 595 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 CYLC1P35663 651 aaPredicted RBP9.18□□□□□ -0.94
CD44-208ENST00000428726 GMPSP49915 693 aaPredicted RBP9.18□□□□□ -0.94
CD44-208ENST00000428726 PDIA5Q14554 519 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 TMEM119Q4V9L6 283 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 COBLL1Q53SF7 1204 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 DAB2IPQ5VWQ8 1189 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 PPP4R3AQ6IN85 833 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 RINT1Q6NUQ1 792 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 AADACL2Q6P093 401 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 PALB2Q86YC2 1186 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 CAMKK2Q96RR4 588 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 IDI2Q9BXS1 227 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 EHD4Q9H223 541 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 KCNMB3Q9NPA1 279 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 MYOZ2Q9NPC6 264 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 PLCB1Q9NQ66 1216 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.18□□□□□ -0.94
CD44-208ENST00000428726 FAN1Q9Y2M0 1017 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms