RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GTPBP4Q9BZE4 634 aaKnown RBP11.73□□□□□ -0.53
CUX1-221ENST00000622516 TAOK3Q9H2K8 898 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 RAVER2Q9HCJ3 691 aaKnown RBP11.73□□□□□ -0.53
CUX1-221ENST00000622516 PGAP2Q9UHJ9 254 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 PLAGL2Q9UPG8 496 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 BCS1LQ9Y276 419 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 AKR1B10O60218 316 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 ACTN1P12814 892 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 ALAS1P13196 640 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 CASP4P49662 377 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 RINT1Q6NUQ1 792 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 SRGAP1Q7Z6B7 1085 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 BAP1Q92560 729 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 GOLGA1Q92805 767 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 HOOK2Q96ED9 719 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 HSD17B14Q9BPX1 270 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 ZNF577Q9BSK1 485 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 MLXIPQ9HAP2 919 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 OGFRQ9NZT2 677 aa11.73□□□□□ -0.53
CUX1-221ENST00000622516 ZNF185O15231 689 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 NOL4O94818 638 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 ASNSP08243 561 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 CYP3A4P08684 503 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 KRT83P78385 493 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 DALRD3Q5D0E6 543 aaKnown RBP11.72□□□□□ -0.53
CUX1-221ENST00000622516 DCAF17Q5H9S7 520 aaPredicted RBP11.72□□□□□ -0.53
CUX1-221ENST00000622516 DNAAF5Q86Y56 855 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 PSMB7Q99436 277 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 WDR11Q9BZH6 1224 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 HAUS4Q9H6D7 363 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 FRMD3A2A2Y4 597 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 PHF20L1A8MW92 1017 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 NFKBIEO00221 500 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 TBCAO75347 108 aaKnown RBP11.72□□□□□ -0.53
CUX1-221ENST00000622516 PSMD10O75832 226 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 ITGB5P18084 799 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 EPS15P42566 896 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 KIF11P52732 1056 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 KCNH2Q12809 1159 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 GRIPAP1Q4V328 841 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 TDRD12Q587J7 1177 aaKnown RBP11.72□□□□□ -0.53
CUX1-221ENST00000622516 TCERG1LQ5VWI1 586 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 FAM83AQ86UY5 434 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 CNPY4Q8N129 248 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 MYCT1Q8N699 235 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 NOA1Q8NC60 698 aaKnown RBP11.72□□□□□ -0.53
CUX1-221ENST00000622516 UNC45AQ9H3U1 944 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 MYO6Q9UM54 1294 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 MRPL11Q9Y3B7 192 aaKnown RBP11.72□□□□□ -0.53
CUX1-221ENST00000622516 PCDHB13Q9Y5F0 798 aa11.72□□□□□ -0.53
CUX1-221ENST00000622516 EIF3CLB5ME19 914 aaKnown RBP11.71□□□□□ -0.53
CUX1-221ENST00000622516 RASSF7Q02833 373 aa11.71□□□□□ -0.53
CUX1-221ENST00000622516 COG2Q14746 738 aa11.71□□□□□ -0.53
CUX1-221ENST00000622516 SPA17Q15506 151 aa11.71□□□□□ -0.53
CUX1-221ENST00000622516 KNOP1Q1ED39 458 aaKnown RBP11.71□□□□□ -0.53
CUX1-221ENST00000622516 TMCO3Q6UWJ1 677 aa11.71□□□□□ -0.53
CUX1-221ENST00000622516 WNK4Q96J92 1243 aa11.71□□□□□ -0.53
CUX1-221ENST00000622516 EIF3CQ99613 913 aaKnown RBP11.71□□□□□ -0.53
CUX1-221ENST00000622516 IFIH1Q9BYX4 1025 aaKnown RBP11.71□□□□□ -0.53
CUX1-221ENST00000622516 FHOD1Q9Y613 1164 aa11.71□□□□□ -0.53
CUX1-221ENST00000622516 ZNF536O15090 1300 aa11.71□□□□□ -0.53
CUX1-221ENST00000622516 CENPFP49454 3210 aa11.71□□□□□ -0.53
CUX1-221ENST00000622516 A0A1W2PQJ5 194 aa11.71□□□□□ -0.54
CUX1-221ENST00000622516 IPO5O00410 1097 aaKnown RBP11.71□□□□□ -0.54
CUX1-221ENST00000622516 CETN3O15182 167 aa11.71□□□□□ -0.54
CUX1-221ENST00000622516 KRT86O43790 486 aa11.71□□□□□ -0.54
CUX1-221ENST00000622516 AKAP3O75969 853 aa11.71□□□□□ -0.54
CUX1-221ENST00000622516 SLC9A1P19634 815 aa11.71□□□□□ -0.54
CUX1-221ENST00000622516 KIF5AQ12840 1032 aa11.71□□□□□ -0.54
CUX1-221ENST00000622516 MTMR2Q13614 643 aa11.71□□□□□ -0.54
CUX1-221ENST00000622516 MUM1L1Q5H9M0 696 aa11.71□□□□□ -0.54
CUX1-221ENST00000622516 FIGNQ5HY92 759 aa11.71□□□□□ -0.54
CUX1-221ENST00000622516 NBPF12Q5TAG4 269 aaPredicted RBP11.71□□□□□ -0.54
CUX1-221ENST00000622516 TRIM59Q8IWR1 403 aa11.71□□□□□ -0.54
CUX1-221ENST00000622516 TEPSINQ96N21 525 aa11.71□□□□□ -0.54
CUX1-221ENST00000622516 FEM1BQ9UK73 627 aa11.71□□□□□ -0.54
CUX1-221ENST00000622516 PCDHA13Q9Y5I0 950 aa11.71□□□□□ -0.54
CUX1-221ENST00000622516 CAPN6Q9Y6Q1 641 aa11.71□□□□□ -0.54
CUX1-221ENST00000622516 PITPNM2Q9BZ72 1349 aa11.71□□□□□ -0.54
CUX1-221ENST00000622516 TMEM150BA6NC51 233 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 TBC1D12O60347 775 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 TLR2O60603 784 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 FLOT1O75955 427 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 MOCS3O95396 460 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 EYA4O95677 639 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 MICALL2Q8IY33 904 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 GPR161Q8N6U8 529 aaKnown RBP11.7□□□□□ -0.54
CUX1-221ENST00000622516 ZKSCAN4Q969J2 545 aaPredicted RBP11.7□□□□□ -0.54
CUX1-221ENST00000622516 PNKPQ96T60 521 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 SAMM50Q9Y512 469 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 EIF2AK2P19525 551 aaKnown RBP11.7□□□□□ -0.54
CUX1-221ENST00000622516 PTGER2P43116 358 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 AMPD2Q01433 879 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 RAPGEF1Q13905 1077 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 MCTP2Q6DN12 878 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 CCDC170Q8IYT3 715 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 ZBED3Q96IU2 234 aaPredicted RBP11.7□□□□□ -0.54
CUX1-221ENST00000622516 ANKZF1Q9H8Y5 726 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 JADE2Q9NQC1 790 aa11.7□□□□□ -0.54
CUX1-221ENST00000622516 TMEM51Q9NW97 253 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms