RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 NIPA1Q7RTP0 329 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 PLA2G4DQ86XP0 818 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 CKAP2LQ8IYA6 745 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 NME8Q8N427 588 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 FIBCD1Q8N539 461 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 CCDC148Q8NFR7 591 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 PGBD1Q96JS3 809 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 FTHL17Q9BXU8 183 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 FAM49AQ9H0Q0 323 aaPredicted RBP14.31□□□□□ -0.12
SNX1-209ENST00000559961 SUGCTQ9HAC7 445 aa14.31□□□□□ -0.12
SNX1-209ENST00000559961 DDX39AO00148 427 aaKnown RBP14.3□□□□□ -0.12
SNX1-209ENST00000559961 MEIS1O00470 390 aa14.3□□□□□ -0.12
SNX1-209ENST00000559961 CHRNA1P02708 482 aa14.3□□□□□ -0.12
SNX1-209ENST00000559961 ADD1P35611 737 aaKnown RBP14.3□□□□□ -0.12
SNX1-209ENST00000559961 SREBF1P36956 1147 aa14.3□□□□□ -0.12
SNX1-209ENST00000559961 ADAM17P78536 824 aa14.3□□□□□ -0.12
SNX1-209ENST00000559961 MRPS6P82932 125 aaKnown RBP14.3□□□□□ -0.12
SNX1-209ENST00000559961 HTRA4P83105 476 aaPredicted RBP14.3□□□□□ -0.12
SNX1-209ENST00000559961 SETQ01105 290 aaPredicted RBP14.3□□□□□ -0.12
SNX1-209ENST00000559961 TCTN1Q2MV58 587 aa14.3□□□□□ -0.12
SNX1-209ENST00000559961 CPLX2Q6PUV4 134 aaKnown RBP14.3□□□□□ -0.12
SNX1-209ENST00000559961 RUFY4Q6ZNE9 571 aa14.3□□□□□ -0.12
SNX1-209ENST00000559961 TSHZ1Q6ZSZ6 1077 aa14.3□□□□□ -0.12
SNX1-209ENST00000559961 FAM43BQ6ZT52 329 aaPredicted RBP14.3□□□□□ -0.12
SNX1-209ENST00000559961 TRIM22Q8IYM9 498 aa14.3□□□□□ -0.12
SNX1-209ENST00000559961 REXO1Q8N1G1 1221 aaKnown RBP14.3□□□□□ -0.12
SNX1-209ENST00000559961 AGO4Q9HCK5 861 aaKnown RBP14.3□□□□□ -0.12
SNX1-209ENST00000559961 TBC1D22BQ9NU19 505 aa14.3□□□□□ -0.12
SNX1-209ENST00000559961 CDY2AQ9Y6F7 541 aa14.3□□□□□ -0.12
SNX1-209ENST00000559961 SCN5AQ14524 2016 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 MBLAC1A4D2B0 266 aaPredicted RBP14.29□□□□□ -0.12
SNX1-209ENST00000559961 CPLX1O14810 134 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 PRPF3O43395 683 aaKnown RBP14.29□□□□□ -0.12
SNX1-209ENST00000559961 HBP1O60381 514 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 ARHGEF15O94989 841 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 STAG3L1P0CL83 205 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 ARP10275 920 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 CDC27P30260 824 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 HSPA4P34932 840 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 TFF2Q03403 129 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 GPM6BQ13491 265 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 EPC2Q52LR7 807 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 TIGD5Q53EQ6 642 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 KRT40Q6A162 431 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 SKAP1Q86WV1 359 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 TMEM192Q8IY95 271 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 CYP2W1Q8TAV3 490 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 C17orf80Q9BSJ5 609 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 ZNF577Q9BSK1 485 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 ZNF302Q9NR11 478 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 TMEM260Q9NX78 707 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 LRFN2Q9ULH4 789 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 SAMM50Q9Y512 469 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 PCDHA2Q9Y5H9 948 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 TRPV2Q9Y5S1 764 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 SNX14Q9Y5W7 946 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 SQORQ9Y6N5 450 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 MYH7BA7E2Y1 1941 aa14.29□□□□□ -0.12
SNX1-209ENST00000559961 ESYT2A0FGR8 921 aa14.28□□□□□ -0.12
SNX1-209ENST00000559961 IPO5O00410 1097 aaKnown RBP14.28□□□□□ -0.12
SNX1-209ENST00000559961 RB1P06400 928 aa14.28□□□□□ -0.12
SNX1-209ENST00000559961 RPS6KB1P23443 525 aa14.28□□□□□ -0.12
SNX1-209ENST00000559961 FUT2Q10981 343 aa14.28□□□□□ -0.12
SNX1-209ENST00000559961 PAK2Q13177 524 aa14.28□□□□□ -0.12
SNX1-209ENST00000559961 COL9A3Q14050 684 aaPredicted RBP14.28□□□□□ -0.12
SNX1-209ENST00000559961 BTG3Q14201 252 aaPredicted RBP14.28□□□□□ -0.12
SNX1-209ENST00000559961 LPIN1Q14693 890 aa14.28□□□□□ -0.12
SNX1-209ENST00000559961 PLCB4Q15147 1175 aa14.28□□□□□ -0.12
SNX1-209ENST00000559961 FBXO47Q5MNV8 452 aa14.28□□□□□ -0.12
SNX1-209ENST00000559961 PDXDC2PQ6P474 469 aa14.28□□□□□ -0.12
SNX1-209ENST00000559961 EP400NLQ6ZTU2 488 aa14.28□□□□□ -0.12
SNX1-209ENST00000559961 SP7Q8TDD2 431 aaPredicted RBP14.28□□□□□ -0.12
SNX1-209ENST00000559961 MRPL38Q96DV4 380 aaKnown RBP14.28□□□□□ -0.12
SNX1-209ENST00000559961 C11orf84Q9BUA3 381 aaPredicted RBP14.28□□□□□ -0.12
SNX1-209ENST00000559961 SLC26A6Q9BXS9 759 aa14.28□□□□□ -0.12
SNX1-209ENST00000559961 C22orf23Q9BZE7 217 aa14.28□□□□□ -0.12
SNX1-209ENST00000559961 TANC1Q9C0D5 1861 aa14.28□□□□□ -0.12
SNX1-209ENST00000559961 FAM50BQ9Y247 325 aa14.28□□□□□ -0.12
SNX1-209ENST00000559961 TELO2Q9Y4R8 837 aa14.28□□□□□ -0.12
SNX1-209ENST00000559961 CYP46A1Q9Y6A2 500 aa14.28□□□□□ -0.12
SNX1-209ENST00000559961 SMIM35A0A1B0GVV1 85 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.27□□□□□ -0.13
SNX1-209ENST00000559961 H3BNC9 293 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 ENPP3O14638 875 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 EPB41L2O43491 1005 aaKnown RBP14.27□□□□□ -0.13
SNX1-209ENST00000559961 NCK2O43639 380 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 LPXNO60711 386 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 PSAPP07602 524 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 CYP3A4P08684 503 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 BMP1P13497 986 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 CPA1P15085 419 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 CTNNB1P35222 781 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 KCNQ1P51787 676 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 NLRP5P59047 1200 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 KRT76Q01546 638 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 SSRP1Q08945 709 aaKnown RBP14.27□□□□□ -0.13
SNX1-209ENST00000559961 PUS10Q3MIT2 529 aaKnown RBP14.27□□□□□ -0.13
SNX1-209ENST00000559961 ZNF484Q5JVG2 852 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 TYW1BQ6NUM6 668 aa14.27□□□□□ -0.13
SNX1-209ENST00000559961 SWSAP1Q6NVH7 229 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms