RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 BAP1Q92560 729 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 GOLGA1Q92805 767 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 HOOK2Q96ED9 719 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 HSD17B14Q9BPX1 270 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 ZNF577Q9BSK1 485 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 MLXIPQ9HAP2 919 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 OGFRQ9NZT2 677 aa11.73□□□□□ -0.53
CUX1-217ENST00000558836 ZNF185O15231 689 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 NOL4O94818 638 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 ASNSP08243 561 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 CYP3A4P08684 503 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 KRT83P78385 493 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 DALRD3Q5D0E6 543 aaKnown RBP11.72□□□□□ -0.53
CUX1-217ENST00000558836 DCAF17Q5H9S7 520 aaPredicted RBP11.72□□□□□ -0.53
CUX1-217ENST00000558836 DNAAF5Q86Y56 855 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 PSMB7Q99436 277 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 WDR11Q9BZH6 1224 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 HAUS4Q9H6D7 363 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 FRMD3A2A2Y4 597 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 PHF20L1A8MW92 1017 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 NFKBIEO00221 500 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 TBCAO75347 108 aaKnown RBP11.72□□□□□ -0.53
CUX1-217ENST00000558836 PSMD10O75832 226 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 ITGB5P18084 799 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 EPS15P42566 896 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 KIF11P52732 1056 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 KCNH2Q12809 1159 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 GRIPAP1Q4V328 841 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 TDRD12Q587J7 1177 aaKnown RBP11.72□□□□□ -0.53
CUX1-217ENST00000558836 TCERG1LQ5VWI1 586 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.72□□□□□ -0.53
CUX1-217ENST00000558836 FAM83AQ86UY5 434 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 MYCT1Q8N699 235 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 NOA1Q8NC60 698 aaKnown RBP11.72□□□□□ -0.53
CUX1-217ENST00000558836 UNC45AQ9H3U1 944 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 MYO6Q9UM54 1294 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 MRPL11Q9Y3B7 192 aaKnown RBP11.72□□□□□ -0.53
CUX1-217ENST00000558836 PCDHB13Q9Y5F0 798 aa11.72□□□□□ -0.53
CUX1-217ENST00000558836 EIF3CLB5ME19 914 aaKnown RBP11.71□□□□□ -0.53
CUX1-217ENST00000558836 RASSF7Q02833 373 aa11.71□□□□□ -0.53
CUX1-217ENST00000558836 COG2Q14746 738 aa11.71□□□□□ -0.53
CUX1-217ENST00000558836 SPA17Q15506 151 aa11.71□□□□□ -0.53
CUX1-217ENST00000558836 KNOP1Q1ED39 458 aaKnown RBP11.71□□□□□ -0.53
CUX1-217ENST00000558836 TMCO3Q6UWJ1 677 aa11.71□□□□□ -0.53
CUX1-217ENST00000558836 WNK4Q96J92 1243 aa11.71□□□□□ -0.53
CUX1-217ENST00000558836 EIF3CQ99613 913 aaKnown RBP11.71□□□□□ -0.53
CUX1-217ENST00000558836 IFIH1Q9BYX4 1025 aaKnown RBP11.71□□□□□ -0.53
CUX1-217ENST00000558836 FHOD1Q9Y613 1164 aa11.71□□□□□ -0.53
CUX1-217ENST00000558836 ZNF536O15090 1300 aa11.71□□□□□ -0.53
CUX1-217ENST00000558836 CENPFP49454 3210 aa11.71□□□□□ -0.53
CUX1-217ENST00000558836 A0A1W2PQJ5 194 aa11.71□□□□□ -0.54
CUX1-217ENST00000558836 IPO5O00410 1097 aaKnown RBP11.71□□□□□ -0.54
CUX1-217ENST00000558836 CETN3O15182 167 aa11.71□□□□□ -0.54
CUX1-217ENST00000558836 KRT86O43790 486 aa11.71□□□□□ -0.54
CUX1-217ENST00000558836 AKAP3O75969 853 aa11.71□□□□□ -0.54
CUX1-217ENST00000558836 SLC9A1P19634 815 aa11.71□□□□□ -0.54
CUX1-217ENST00000558836 KIF5AQ12840 1032 aa11.71□□□□□ -0.54
CUX1-217ENST00000558836 MTMR2Q13614 643 aa11.71□□□□□ -0.54
CUX1-217ENST00000558836 MUM1L1Q5H9M0 696 aa11.71□□□□□ -0.54
CUX1-217ENST00000558836 FIGNQ5HY92 759 aa11.71□□□□□ -0.54
CUX1-217ENST00000558836 NBPF12Q5TAG4 269 aaPredicted RBP11.71□□□□□ -0.54
CUX1-217ENST00000558836 TRIM59Q8IWR1 403 aa11.71□□□□□ -0.54
CUX1-217ENST00000558836 TEPSINQ96N21 525 aa11.71□□□□□ -0.54
CUX1-217ENST00000558836 FEM1BQ9UK73 627 aa11.71□□□□□ -0.54
CUX1-217ENST00000558836 PCDHA13Q9Y5I0 950 aa11.71□□□□□ -0.54
CUX1-217ENST00000558836 CAPN6Q9Y6Q1 641 aa11.71□□□□□ -0.54
CUX1-217ENST00000558836 PITPNM2Q9BZ72 1349 aa11.71□□□□□ -0.54
CUX1-217ENST00000558836 TMEM150BA6NC51 233 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 TBC1D12O60347 775 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 TLR2O60603 784 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 FLOT1O75955 427 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 MOCS3O95396 460 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 EYA4O95677 639 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 MICALL2Q8IY33 904 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 GPR161Q8N6U8 529 aaKnown RBP11.7□□□□□ -0.54
CUX1-217ENST00000558836 ZKSCAN4Q969J2 545 aaPredicted RBP11.7□□□□□ -0.54
CUX1-217ENST00000558836 PNKPQ96T60 521 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 SAMM50Q9Y512 469 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 EIF2AK2P19525 551 aaKnown RBP11.7□□□□□ -0.54
CUX1-217ENST00000558836 PTGER2P43116 358 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 AMPD2Q01433 879 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 RAPGEF1Q13905 1077 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 MCTP2Q6DN12 878 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 CCDC170Q8IYT3 715 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 ZBED3Q96IU2 234 aaPredicted RBP11.7□□□□□ -0.54
CUX1-217ENST00000558836 ANKZF1Q9H8Y5 726 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 JADE2Q9NQC1 790 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 ARGLU1Q9NWB6 273 aaPredicted RBP11.7□□□□□ -0.54
CUX1-217ENST00000558836 SALL4Q9UJQ4 1053 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 BUB1O43683 1085 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 SASH3O75995 380 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 FAM13AO94988 1023 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 PNMA6AP0CW24 399 aaPredicted RBP11.7□□□□□ -0.54
CUX1-217ENST00000558836 CXCR5P32302 372 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 GMPSP49915 693 aaPredicted RBP11.7□□□□□ -0.54
CUX1-217ENST00000558836 DNA2P51530 1060 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 PRELPP51888 382 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 SPP2Q13103 211 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 PRKG1Q13976 671 aa11.7□□□□□ -0.54
CUX1-217ENST00000558836 PDXDC1Q6P996 788 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms