RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 KRT79Q5XKE5 535 aa19.4■□□□□ 0.7
NUP54-205ENST00000507257 BRINP3Q76B58 766 aa19.4■□□□□ 0.7
NUP54-205ENST00000507257 IRF2BP2Q7Z5L9 587 aa19.4■□□□□ 0.7
NUP54-205ENST00000507257 HOOK3Q86VS8 718 aa19.4■□□□□ 0.7
NUP54-205ENST00000507257 SYCE1Q8N0S2 351 aa19.4■□□□□ 0.7
NUP54-205ENST00000507257 METTL13Q8N6R0 699 aa19.4■□□□□ 0.7
NUP54-205ENST00000507257 UBLCP1Q8WVY7 318 aaPredicted RBP19.4■□□□□ 0.7
NUP54-205ENST00000507257 XPO6Q96QU8 1125 aaKnown RBP19.4■□□□□ 0.7
NUP54-205ENST00000507257 CCT8L1PA6NM43 557 aa19.39■□□□□ 0.7
NUP54-205ENST00000507257 USP17L8P0C7I0 530 aa19.39■□□□□ 0.7
NUP54-205ENST00000507257 TSPY3P0CV98 308 aa19.39■□□□□ 0.7
NUP54-205ENST00000507257 TSPY8P0CW00 308 aa19.39■□□□□ 0.7
NUP54-205ENST00000507257 SLC8A3P57103 927 aa19.39■□□□□ 0.7
NUP54-205ENST00000507257 MAGOHP61326 146 aaKnown RBP19.39■□□□□ 0.7
NUP54-205ENST00000507257 EDRF1Q3B7T1 1238 aa19.39■□□□□ 0.7
NUP54-205ENST00000507257 HYIQ5T013 277 aa19.39■□□□□ 0.7
NUP54-205ENST00000507257 CPLX4Q7Z7G2 160 aa19.39■□□□□ 0.7
NUP54-205ENST00000507257 FAM133AQ8N9E0 248 aa19.39■□□□□ 0.7
NUP54-205ENST00000507257 CCDC197Q8NCU1 140 aa19.39■□□□□ 0.7
NUP54-205ENST00000507257 TPCN2Q8NHX9 752 aa19.39■□□□□ 0.7
NUP54-205ENST00000507257 MAGOHBQ96A72 148 aaKnown RBP19.39■□□□□ 0.7
NUP54-205ENST00000507257 DIS3Q9Y2L1 958 aaKnown RBP19.39■□□□□ 0.7
NUP54-205ENST00000507257 NAV1Q8NEY1 1877 aa19.39■□□□□ 0.69
NUP54-205ENST00000507257 A0A1B0GUA9 196 aa19.39■□□□□ 0.69
NUP54-205ENST00000507257 F8W031 263 aaPredicted RBP19.39■□□□□ 0.69
NUP54-205ENST00000507257 NUDT17P0C025 328 aa19.39■□□□□ 0.69
NUP54-205ENST00000507257 PDHBP11177 359 aa19.39■□□□□ 0.69
NUP54-205ENST00000507257 POU5F1Q01860 360 aaKnown RBP19.39■□□□□ 0.69
NUP54-205ENST00000507257 DPY19L2P1Q6NXN4 242 aa19.39■□□□□ 0.69
NUP54-205ENST00000507257 CROCCP2Q86T23 111 aa19.39■□□□□ 0.69
NUP54-205ENST00000507257 TEX11Q8IYF3 940 aa19.39■□□□□ 0.69
NUP54-205ENST00000507257 ZNF317Q96PQ6 595 aaPredicted RBP19.39■□□□□ 0.69
NUP54-205ENST00000507257 CCDC134Q9H6E4 229 aa19.39■□□□□ 0.69
NUP54-205ENST00000507257 MKNK2Q9HBH9 465 aa19.39■□□□□ 0.69
NUP54-205ENST00000507257 NAGPAQ9UK23 515 aa19.39■□□□□ 0.69
NUP54-205ENST00000507257 NIP7Q9Y221 180 aaKnown RBP eCLIP19.39■□□□□ 0.69
NUP54-205ENST00000507257 KRIT1O00522 736 aa19.38■□□□□ 0.69
NUP54-205ENST00000507257 TRIM37O94972 964 aa19.38■□□□□ 0.69
NUP54-205ENST00000507257 RNASE9P60153 205 aaKnown RBP19.38■□□□□ 0.69
NUP54-205ENST00000507257 KRT71Q3SY84 523 aa19.38■□□□□ 0.69
NUP54-205ENST00000507257 SPTY2D1Q68D10 685 aaPredicted RBP19.38■□□□□ 0.69
NUP54-205ENST00000507257 DDX42Q86XP3 938 aaKnown RBP eCLIP19.38■□□□□ 0.69
NUP54-205ENST00000507257 ANKS4BQ8N8V4 417 aa19.38■□□□□ 0.69
NUP54-205ENST00000507257 BANK1Q8NDB2 785 aa19.38■□□□□ 0.69
NUP54-205ENST00000507257 CCHCR1Q8TD31 782 aa19.38■□□□□ 0.69
NUP54-205ENST00000507257 SNX29Q8TEQ0 813 aa19.38■□□□□ 0.69
NUP54-205ENST00000507257 HOOK2Q96ED9 719 aa19.38■□□□□ 0.69
NUP54-205ENST00000507257 SEC63Q9UGP8 760 aaKnown RBP19.38■□□□□ 0.69
NUP54-205ENST00000507257 SLC12A4Q9UP95 1085 aa19.38■□□□□ 0.69
NUP54-205ENST00000507257 USP17L3A6NCW0 530 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 USP17L4A6NCW7 530 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 CFAP73A6NFT4 308 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 DAPK3O43293 454 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 FLOT1O75955 427 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 GFPT2O94808 682 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 ELF3P78545 371 aaPredicted RBP19.37■□□□□ 0.69
NUP54-205ENST00000507257 PTK2Q05397 1052 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 LRRC41Q15345 812 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 USP17L1Q7RTZ2 530 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 ZNF571Q7Z3V5 609 aaPredicted RBP19.37■□□□□ 0.69
NUP54-205ENST00000507257 PIGWQ7Z7B1 504 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 GPIHBP1Q8IV16 184 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 ZNF444Q8N0Y2 327 aaPredicted RBP19.37■□□□□ 0.69
NUP54-205ENST00000507257 PGM2Q96G03 612 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 DDX47Q9H0S4 455 aaKnown RBP19.37■□□□□ 0.69
NUP54-205ENST00000507257 RAB17Q9H0T7 212 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 KCTD10Q9H3F6 313 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 BMP2KQ9NSY1 1161 aaPredicted RBP19.37■□□□□ 0.69
NUP54-205ENST00000507257 UTP11Q9Y3A2 253 aaKnown RBP19.37■□□□□ 0.69
NUP54-205ENST00000507257 PCDHA2Q9Y5H9 948 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 TNRC6CQ9HCJ0 1690 aaKnown RBP19.37■□□□□ 0.69
NUP54-205ENST00000507257 TRHP20396 242 aaPredicted RBP19.37■□□□□ 0.69
NUP54-205ENST00000507257 FLT3P36888 993 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 CEP57Q86XR8 500 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 MAB21L3Q8N8X9 362 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 GLIS3Q8NEA6 775 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 HES6Q96HZ4 224 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 ZNF287Q9HBT7 754 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 PANK4Q9NVE7 773 aa19.37■□□□□ 0.69
NUP54-205ENST00000507257 BCCIPQ9P287 314 aaKnown RBP eCLIP19.37■□□□□ 0.69
NUP54-205ENST00000507257 KDM3AQ9Y4C1 1321 aa19.36■□□□□ 0.69
NUP54-205ENST00000507257 ATP6V1G2O95670 118 aa19.36■□□□□ 0.69
NUP54-205ENST00000507257 PRDX5P30044 214 aa19.36■□□□□ 0.69
NUP54-205ENST00000507257 HIBADHP31937 336 aaKnown RBP19.36■□□□□ 0.69
NUP54-205ENST00000507257 DHX9Q08211 1270 aaKnown RBP19.36■□□□□ 0.69
NUP54-205ENST00000507257 SLMAPQ14BN4 828 aa19.36■□□□□ 0.69
NUP54-205ENST00000507257 CLUL1Q15846 466 aa19.36■□□□□ 0.69
NUP54-205ENST00000507257 MSL1Q68DK7 614 aa19.36■□□□□ 0.69
NUP54-205ENST00000507257 ALKBH5Q6P6C2 394 aaKnown RBP19.36■□□□□ 0.69
NUP54-205ENST00000507257 PEX26Q7Z412 305 aa19.36■□□□□ 0.69
NUP54-205ENST00000507257 KCNK18Q7Z418 384 aa19.36■□□□□ 0.69
NUP54-205ENST00000507257 CCDC65Q8IXS2 484 aa19.36■□□□□ 0.69
NUP54-205ENST00000507257 ZNF622Q969S3 477 aaKnown RBP eCLIP19.36■□□□□ 0.69
NUP54-205ENST00000507257 ROBO1Q9Y6N7 1651 aa19.36■□□□□ 0.69
NUP54-205ENST00000507257 MMP13P45452 471 aa19.35■□□□□ 0.69
NUP54-205ENST00000507257 PAXIP1Q6ZW49 1069 aaPredicted RBP19.35■□□□□ 0.69
NUP54-205ENST00000507257 CUL5Q93034 780 aa19.35■□□□□ 0.69
NUP54-205ENST00000507257 FMO2Q99518 471 aa19.35■□□□□ 0.69
NUP54-205ENST00000507257 NT5C3AQ9H0P0 336 aa19.35■□□□□ 0.69
NUP54-205ENST00000507257 EBF2Q9HAK2 575 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms