RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 FUT2Q10981 343 aa18.42■□□□□ 0.54
COL7A1-204ENST00000462475 TCEAL5Q5H9L2 206 aa18.42■□□□□ 0.54
COL7A1-204ENST00000462475 SYNE3Q6ZMZ3 975 aa18.42■□□□□ 0.54
COL7A1-204ENST00000462475 FIBCD1Q8N539 461 aa18.42■□□□□ 0.54
COL7A1-204ENST00000462475 BANK1Q8NDB2 785 aa18.42■□□□□ 0.54
COL7A1-204ENST00000462475 IL17RAQ96F46 866 aa18.42■□□□□ 0.54
COL7A1-204ENST00000462475 NEK1Q96PY6 1258 aa18.42■□□□□ 0.54
COL7A1-204ENST00000462475 MXRA8Q9BRK3 442 aa18.42■□□□□ 0.54
COL7A1-204ENST00000462475 FAM49AQ9H0Q0 323 aaPredicted RBP18.42■□□□□ 0.54
COL7A1-204ENST00000462475 AGO3Q9H9G7 860 aaKnown RBP18.42■□□□□ 0.54
COL7A1-204ENST00000462475 SLC9A2Q9UBY0 812 aa18.42■□□□□ 0.54
COL7A1-204ENST00000462475 BRPF3Q9ULD4 1205 aa18.42■□□□□ 0.54
COL7A1-204ENST00000462475 ADGRA3Q8IWK6 1321 aa18.42■□□□□ 0.54
COL7A1-204ENST00000462475 ARP10275 920 aa18.41■□□□□ 0.54
COL7A1-204ENST00000462475 INSRRP14616 1297 aa18.41■□□□□ 0.54
COL7A1-204ENST00000462475 IL9P15248 144 aa18.41■□□□□ 0.54
COL7A1-204ENST00000462475 MRPS6P82932 125 aaKnown RBP18.41■□□□□ 0.54
COL7A1-204ENST00000462475 RTN1Q16799 776 aa18.41■□□□□ 0.54
COL7A1-204ENST00000462475 BMP2KLQ5H9B9 411 aa18.41■□□□□ 0.54
COL7A1-204ENST00000462475 RNF20Q5VTR2 975 aa18.41■□□□□ 0.54
COL7A1-204ENST00000462475 PPP1R18Q6NYC8 613 aa18.41■□□□□ 0.54
COL7A1-204ENST00000462475 TSHZ1Q6ZSZ6 1077 aa18.41■□□□□ 0.54
COL7A1-204ENST00000462475 LINC01599Q8WXQ3 324 aa18.41■□□□□ 0.54
COL7A1-204ENST00000462475 ANO3Q9BYT9 981 aa18.41■□□□□ 0.54
COL7A1-204ENST00000462475 RIC8AQ9NPQ8 531 aa18.41■□□□□ 0.54
COL7A1-204ENST00000462475 RBM28Q9NW13 759 aaKnown RBP18.41■□□□□ 0.54
COL7A1-204ENST00000462475 H3BQ06 376 aaPredicted RBP18.4■□□□□ 0.54
COL7A1-204ENST00000462475 STXBP3O00186 592 aa18.4■□□□□ 0.54
COL7A1-204ENST00000462475 ENPP3O14638 875 aa18.4■□□□□ 0.54
COL7A1-204ENST00000462475 CD52P31358 61 aa18.4■□□□□ 0.54
COL7A1-204ENST00000462475 ACTR2P61160 394 aa18.4■□□□□ 0.54
COL7A1-204ENST00000462475 EXOSC10Q01780 885 aaKnown RBP18.4■□□□□ 0.54
COL7A1-204ENST00000462475 ITGB3BPQ13352 177 aaPredicted RBP18.4■□□□□ 0.54
COL7A1-204ENST00000462475 ADCK5Q3MIX3 580 aa18.4■□□□□ 0.54
COL7A1-204ENST00000462475 PTCRAQ6ISU1 281 aaPredicted RBP18.4■□□□□ 0.54
COL7A1-204ENST00000462475 RASEFQ8IZ41 740 aa18.4■□□□□ 0.54
COL7A1-204ENST00000462475 NEK9Q8TD19 979 aa18.4■□□□□ 0.54
COL7A1-204ENST00000462475 TRAPPC12Q8WVT3 735 aa18.4■□□□□ 0.54
COL7A1-204ENST00000462475 LRFN3Q9BTN0 628 aa18.4■□□□□ 0.54
COL7A1-204ENST00000462475 AZI2Q9H6S1 392 aa18.4■□□□□ 0.54
COL7A1-204ENST00000462475 TMEM260Q9NX78 707 aa18.4■□□□□ 0.54
COL7A1-204ENST00000462475 TRPC6Q9Y210 931 aa18.4■□□□□ 0.54
COL7A1-204ENST00000462475 RRN3P2A6NIE6 340 aa18.39■□□□□ 0.53
COL7A1-204ENST00000462475 C5orf67F2Z3F1 127 aa18.39■□□□□ 0.53
COL7A1-204ENST00000462475 ZBTB43O43298 467 aa18.39■□□□□ 0.53
COL7A1-204ENST00000462475 ADCY7P51828 1080 aa18.39■□□□□ 0.53
COL7A1-204ENST00000462475 TMEM62Q0P6H9 643 aa18.39■□□□□ 0.53
COL7A1-204ENST00000462475 PLCB4Q15147 1175 aa18.39■□□□□ 0.53
COL7A1-204ENST00000462475 CEP55Q53EZ4 464 aa18.39■□□□□ 0.53
COL7A1-204ENST00000462475 FAM178BQ8IXR5 827 aa18.39■□□□□ 0.53
COL7A1-204ENST00000462475 SDF4Q9BRK5 362 aa18.39■□□□□ 0.53
COL7A1-204ENST00000462475 NSUN3Q9H649 340 aaKnown RBP18.39■□□□□ 0.53
COL7A1-204ENST00000462475 AGO4Q9HCK5 861 aaKnown RBP18.39■□□□□ 0.53
COL7A1-204ENST00000462475 C11orf16Q9NQ32 467 aa18.39■□□□□ 0.53
COL7A1-204ENST00000462475 V9GY48 417 aaPredicted RBP18.39■□□□□ 0.53
COL7A1-204ENST00000462475 NFASCO94856 1347 aa18.39■□□□□ 0.53
COL7A1-204ENST00000462475 NLRC5Q86WI3 1866 aa18.39■□□□□ 0.53
COL7A1-204ENST00000462475 RALGAPA2Q2PPJ7 1873 aa18.38■□□□□ 0.53
COL7A1-204ENST00000462475 FAM86C2PA6NEL3 165 aa18.38■□□□□ 0.53
COL7A1-204ENST00000462475 GRXCR2A6NFK2 248 aa18.38■□□□□ 0.53
COL7A1-204ENST00000462475 GOLGA8AA7E2F4 631 aa18.38■□□□□ 0.53
COL7A1-204ENST00000462475 GOLGA8BA8MQT2 603 aa18.38■□□□□ 0.53
COL7A1-204ENST00000462475 GRM6O15303 877 aa18.38■□□□□ 0.53
COL7A1-204ENST00000462475 BMPR1AP36894 532 aa18.38■□□□□ 0.53
COL7A1-204ENST00000462475 COL19A1Q14993 1142 aa18.38■□□□□ 0.53
COL7A1-204ENST00000462475 EP400NLQ6ZTU2 488 aa18.38■□□□□ 0.53
COL7A1-204ENST00000462475 DHX32Q7L7V1 743 aaKnown RBP18.38■□□□□ 0.53
COL7A1-204ENST00000462475 GJD3Q8N144 294 aa18.38■□□□□ 0.53
COL7A1-204ENST00000462475 CLP1Q92989 425 aaKnown RBP18.38■□□□□ 0.53
COL7A1-204ENST00000462475 ZNF689Q96CS4 500 aaPredicted RBP18.38■□□□□ 0.53
COL7A1-204ENST00000462475 PABPC5Q96DU9 382 aaKnown RBP18.38■□□□□ 0.53
COL7A1-204ENST00000462475 FAM217BQ9NTX9 383 aaPredicted RBP18.38■□□□□ 0.53
COL7A1-204ENST00000462475 TRPV2Q9Y5S1 764 aa18.38■□□□□ 0.53
COL7A1-204ENST00000462475 KAT6AQ92794 2004 aa18.37■□□□□ 0.53
COL7A1-204ENST00000462475 KLF18A0A0U1RQI7 1052 aa18.37■□□□□ 0.53
COL7A1-204ENST00000462475 SMCO2A6NFE2 343 aa18.37■□□□□ 0.53
COL7A1-204ENST00000462475 CSPG5O95196 566 aa18.37■□□□□ 0.53
COL7A1-204ENST00000462475 FOSP01100 380 aaPredicted RBP18.37■□□□□ 0.53
COL7A1-204ENST00000462475 RPLP2P05387 115 aaKnown RBP18.37■□□□□ 0.53
COL7A1-204ENST00000462475 RB1P06400 928 aa18.37■□□□□ 0.53
COL7A1-204ENST00000462475 CDC27P30260 824 aa18.37■□□□□ 0.53
COL7A1-204ENST00000462475 SREBF1P36956 1147 aa18.37■□□□□ 0.53
COL7A1-204ENST00000462475 CLK2P49760 499 aaKnown RBP18.37■□□□□ 0.53
COL7A1-204ENST00000462475 STAT5BP51692 787 aa18.37■□□□□ 0.53
COL7A1-204ENST00000462475 BTG3Q14201 252 aaPredicted RBP18.37■□□□□ 0.53
COL7A1-204ENST00000462475 TMEM31Q5JXX7 168 aa18.37■□□□□ 0.53
COL7A1-204ENST00000462475 IER5Q5VY09 327 aa18.37■□□□□ 0.53
COL7A1-204ENST00000462475 PLPPR4Q7Z2D5 763 aa18.37■□□□□ 0.53
COL7A1-204ENST00000462475 RTN4RL1Q86UN2 441 aaPredicted RBP18.37■□□□□ 0.53
COL7A1-204ENST00000462475 TEX2Q8IWB9 1127 aa18.37■□□□□ 0.53
COL7A1-204ENST00000462475 C11orf84Q9BUA3 381 aaPredicted RBP18.37■□□□□ 0.53
COL7A1-204ENST00000462475 BARHL2Q9NY43 387 aa18.37■□□□□ 0.53
COL7A1-204ENST00000462475 RWDD3Q9Y3V2 267 aa18.37■□□□□ 0.53
COL7A1-204ENST00000462475 PCDHA2Q9Y5H9 948 aa18.37■□□□□ 0.53
COL7A1-204ENST00000462475 PI4K2BG5E9Z4 385 aa18.36■□□□□ 0.53
COL7A1-204ENST00000462475 hCG_1984214I3L0E3 225 aa18.36■□□□□ 0.53
COL7A1-204ENST00000462475 DDX39AO00148 427 aaKnown RBP18.36■□□□□ 0.53
COL7A1-204ENST00000462475 MEIS1O00470 390 aa18.36■□□□□ 0.53
COL7A1-204ENST00000462475 DGKIO75912 1065 aa18.36■□□□□ 0.53
COL7A1-204ENST00000462475 CCNE2O96020 404 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms