RNA–Protein interactions for RNA: ENST00000556288.5

ATXN3-238, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 901 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-238	ENST00000556288	COA1	Q9GZY4	146 aa		5.71	□□□□□ -1.5
ATXN3-238	ENST00000556288	CHMP4B	Q9H444	224 aa	Known RBP	5.71	□□□□□ -1.5
ATXN3-238	ENST00000556288	TAF1D	Q9H5J8	278 aa	Predicted RBP	5.71	□□□□□ -1.5
ATXN3-238	ENST00000556288	ZNF408	Q9H9D4	720 aa		5.71	□□□□□ -1.5
ATXN3-238	ENST00000556288	CD209	Q9NNX6	404 aa		5.71	□□□□□ -1.5
ATXN3-238	ENST00000556288	PRDM10	Q9NQV6	1147 aa		5.71	□□□□□ -1.5
ATXN3-238	ENST00000556288	GPRC5D	Q9NZD1	345 aa		5.71	□□□□□ -1.5
ATXN3-238	ENST00000556288	TJP2	Q9UDY2	1190 aa		5.71	□□□□□ -1.5
ATXN3-238	ENST00000556288	RNF112	Q9ULX5	631 aa		5.71	□□□□□ -1.5
ATXN3-238	ENST00000556288	DDX19B	Q9UMR2	479 aa		5.71	□□□□□ -1.5
ATXN3-238	ENST00000556288	AKAP11	Q9UKA4	1901 aa		5.71	□□□□□ -1.5
ATXN3-238	ENST00000556288	DUOX1	Q9NRD9	1551 aa		5.71	□□□□□ -1.5
ATXN3-238	ENST00000556288	CDK5RAP2	Q96SN8	1893 aa		5.71	□□□□□ -1.5
ATXN3-238	ENST00000556288	PNMA6E	A0A0J9YXQ4	647 aa		5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	LRIG2	O94898	1065 aa		5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	HTR3B	O95264	441 aa		5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	VIL1	P09327	827 aa	Known RBP	5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	IL15	P40933	162 aa	Predicted RBP	5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	RFX5	P48382	616 aa	Predicted RBP	5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	IRX6	P78412	446 aa	Predicted RBP	5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	HTRA3	P83110	453 aa		5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	GRM1	Q13255	1194 aa		5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	MVP	Q14764	893 aa	Known RBP	5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	ATP2B3	Q16720	1220 aa		5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	RABL6	Q3YEC7	729 aa	Predicted RBP	5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	MCAT	Q8IVS2	390 aa	Known RBP	5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	CNTROB	Q8N137	903 aa		5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	DCPS	Q96C86	337 aa	Known RBP	5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	ACSF2	Q96CM8	615 aa	Predicted RBP	5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	TMEM87B	Q96K49	555 aa		5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	FAM84B	Q96KN1	310 aa	Predicted RBP	5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	DPH2	Q9BQC3	489 aa	Predicted RBP	5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	TGIF2	Q9GZN2	237 aa		5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	LRRC4C	Q9HCJ2	640 aa		5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	ADARB2	Q9NS39	739 aa	Known RBP	5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	GNL3L	Q9NVN8	582 aa	Known RBP	5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	ADAM30	Q9UKF2	790 aa		5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	HDAC9	Q9UKV0	1011 aa		5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	SCAF8	Q9UPN6	1271 aa	Known RBP	5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	PCDHB14	Q9Y5E9	798 aa		5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	MYH7	P12883	1935 aa		5.7	□□□□□ -1.5
ATXN3-238	ENST00000556288	MED23	Q9ULK4	1368 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	UPK3BL1	B0FP48	263 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	UPK3BL2	E5RIL1	263 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	CYP26A1	O43174	497 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	HMMR	O75330	724 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	CST3	P01034	146 aa	Predicted RBP	5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	ERCC5	P28715	1186 aa	Predicted RBP	5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	SSTR4	P31391	388 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	GRIK1	P39086	918 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	CAP2	P40123	477 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	ZNF165	P49910	485 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	FSTL1	Q12841	308 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	PAK2	Q13177	524 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	PUM3	Q15397	648 aa	Known RBP	5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	STRIP1	Q5VSL9	837 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	PRAMEF13	Q5VWM6	474 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	SLC6A19	Q695T7	634 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	GK5	Q6ZS86	529 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	USP50	Q70EL3	339 aa	Predicted RBP	5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	ATG9A	Q7Z3C6	839 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	LDHD	Q86WU2	507 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	SLITRK4	Q8IW52	837 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	MRPL41	Q8IXM3	137 aa	Known RBP	5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	MFSD2A	Q8NA29	543 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	FAM13C	Q8NE31	585 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	LPIN2	Q92539	896 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	CCDC8	Q9H0W5	538 aa	Predicted RBP	5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	CCSER2	Q9H7U1	834 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	REV1	Q9UBZ9	1251 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	KLHL3	Q9UH77	587 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	EXOC6B	Q9Y2D4	811 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	ADAMTSL1	Q8N6G6	1762 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	UTRN	P46939	3433 aa		5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	ZNF646	O15015	1829 aa	Predicted RBP	5.69	□□□□□ -1.5
ATXN3-238	ENST00000556288	MYH1	P12882	1939 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	MYH8	P13535	1937 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	TRAF5	O00463	557 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	CIAO1	O76071	339 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	SASH1	O94885	1247 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	HSPA6	P17066	643 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	RPS12	P25398	132 aa	Known RBP	5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	ADORA1	P30542	326 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	YARS	P54577	528 aa	Known RBP	5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	RRP1	P56182	461 aa	Known RBP	5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	RAD51AP2	Q09MP3	1159 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	FZD5	Q13467	585 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	PRKG1	Q13976	671 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	DLGAP5	Q15398	846 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	CPSF6	Q16630	551 aa	Known RBP eCLIP	5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	TMEM201	Q5SNT2	666 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	MFSD14B	Q5SR56	506 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	TTC39A	Q5SRH9	613 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	DLK2	Q6UY11	383 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	REXO1	Q8N1G1	1221 aa	Known RBP	5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	AGBL3	Q8NEM8	1001 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	DPF2	Q92785	391 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	CRBN	Q96SW2	442 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	MIPEP	Q99797	713 aa		5.68	□□□□□ -1.5
ATXN3-238	ENST00000556288	GLIS2	Q9BZE0	524 aa	Predicted RBP	5.68	□□□□□ -1.5

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