RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 SPP2Q13103 211 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 CAGE1Q8TC20 777 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 MKL1Q969V6 931 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 RUSC1Q9BVN2 902 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 JADE2Q9NQC1 790 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 CTAGE9A4FU28 777 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 GPS2Q13227 327 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 RAPGEF1Q13905 1077 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 VWA3BQ502W6 1294 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 EIF2AK1Q9BQI3 630 aaKnown RBP15.36■□□□□ 0.05
TRIM4-201ENST00000349062 NT5C3AQ9H0P0 336 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 NHEJ1Q9H9Q4 299 aaPredicted RBP15.36■□□□□ 0.05
TRIM4-201ENST00000349062 H2AFXP16104 143 aaPredicted RBP15.36■□□□□ 0.05
TRIM4-201ENST00000349062 GCFC2P16383 781 aaKnown RBP15.36■□□□□ 0.05
TRIM4-201ENST00000349062 KCNA3P22001 575 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 NR2F2P24468 414 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 NMT1P30419 496 aaKnown RBP15.36■□□□□ 0.05
TRIM4-201ENST00000349062 CYP2C19P33261 490 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 NT5C2P49902 561 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 HAUS3Q68CZ6 603 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 MICALL2Q8IY33 904 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 DNAJC19Q96DA6 116 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 ZNF577Q9BSK1 485 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 LSM14BQ9BX40 385 aaKnown RBP15.36■□□□□ 0.05
TRIM4-201ENST00000349062 DLEC1Q9Y238 1755 aa15.36■□□□□ 0.05
TRIM4-201ENST00000349062 BUB1O43683 1085 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 ZMYND10O75800 440 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 ACTN1P12814 892 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 CXCR5P32302 372 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 MTMR2Q13614 643 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 SMC1AQ14683 1233 aaKnown RBP15.35■□□□□ 0.05
TRIM4-201ENST00000349062 PPP1R18Q6NYC8 613 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 LACRTQ9GZZ8 138 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 RABGAP1Q9Y3P9 1069 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.35■□□□□ 0.05
TRIM4-201ENST00000349062 MYH7BA7E2Y1 1941 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 LRRC53A6NM62 1247 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 FAM13AO94988 1023 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 SPA17Q15506 151 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 NBPF12Q5TAG4 269 aaPredicted RBP15.35■□□□□ 0.05
TRIM4-201ENST00000349062 CHURC1Q8WUH1 139 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 WDR18Q9BV38 432 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 HERC5Q9UII4 1024 aaKnown RBP15.35■□□□□ 0.05
TRIM4-201ENST00000349062 LRRC10BA6NIK2 292 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 VIL1P09327 827 aaKnown RBP15.35■□□□□ 0.05
TRIM4-201ENST00000349062 POLD1P28340 1107 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 CYP2J2P51589 502 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 SPDYE2Q495Y8 402 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 MIIPQ5JXC2 388 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 WDR59Q6PJI9 974 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 JAKMIP2Q96AA8 810 aa15.35■□□□□ 0.05
TRIM4-201ENST00000349062 PHLPP2Q6ZVD8 1323 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 TESPA1A2RU30 521 aaPredicted RBP15.34■□□□□ 0.05
TRIM4-201ENST00000349062 RCCD1A6NED2 376 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 GOLGA6L9A6NEM1 432 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 ANKRD65E5RJM6 399 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 EIF4A3P38919 411 aaKnown RBP15.34■□□□□ 0.05
TRIM4-201ENST00000349062 CAP2P40123 477 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 USP11P51784 963 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 ARSHQ5FYA8 562 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 SLFN12Q8IYM2 578 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 VCPKMTQ9H867 229 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 ARFGAP3Q9NP61 516 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 MYL1P05976 194 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 GMPSP49915 693 aaPredicted RBP15.34■□□□□ 0.05
TRIM4-201ENST00000349062 CT47A1Q5JQC4 288 aaPredicted RBP15.34■□□□□ 0.05
TRIM4-201ENST00000349062 CENPPQ6IPU0 288 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 IL31RAQ8NI17 732 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 GMCL1Q96IK5 515 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 MLXIPQ9HAP2 919 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 MAGEF1Q9HAY2 307 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 TMX2Q9Y320 296 aa15.34■□□□□ 0.05
TRIM4-201ENST00000349062 TRIM66O15016 1216 aa15.33■□□□□ 0.05
TRIM4-201ENST00000349062 GRIPAP1Q4V328 841 aa15.33■□□□□ 0.05
TRIM4-201ENST00000349062 TMEM119Q4V9L6 283 aa15.33■□□□□ 0.05
TRIM4-201ENST00000349062 ZNF507Q8TCN5 953 aa15.33■□□□□ 0.05
TRIM4-201ENST00000349062 SCFD1Q8WVM8 642 aa15.33■□□□□ 0.05
TRIM4-201ENST00000349062 MTMR8Q96EF0 704 aa15.33■□□□□ 0.05
TRIM4-201ENST00000349062 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.33■□□□□ 0.05
TRIM4-201ENST00000349062 FKBP3Q00688 224 aaKnown RBP15.33■□□□□ 0.04
TRIM4-201ENST00000349062 GUF1Q8N442 669 aaKnown RBP15.33■□□□□ 0.04
TRIM4-201ENST00000349062 NAA15Q9BXJ9 866 aaKnown RBP15.33■□□□□ 0.04
TRIM4-201ENST00000349062 WDR11Q9BZH6 1224 aa15.33■□□□□ 0.04
TRIM4-201ENST00000349062 L2HGDHQ9H9P8 463 aa15.33■□□□□ 0.04
TRIM4-201ENST00000349062 REXO2Q9Y3B8 237 aaKnown RBP15.33■□□□□ 0.04
TRIM4-201ENST00000349062 KDM3AQ9Y4C1 1321 aa15.33■□□□□ 0.04
TRIM4-201ENST00000349062 PVALEFA0A1B0GWK0 134 aa15.33■□□□□ 0.04
TRIM4-201ENST00000349062 RASSF10A6NK89 507 aa15.33■□□□□ 0.04
TRIM4-201ENST00000349062 ZNF185O15231 689 aa15.33■□□□□ 0.04
TRIM4-201ENST00000349062 CASP4P49662 377 aa15.33■□□□□ 0.04
TRIM4-201ENST00000349062 GFPT1Q06210 699 aaPredicted RBP15.33■□□□□ 0.04
TRIM4-201ENST00000349062 SYCP3Q8IZU3 236 aa15.33■□□□□ 0.04
TRIM4-201ENST00000349062 GMCL1P1Q8NEA9 526 aa15.33■□□□□ 0.04
TRIM4-201ENST00000349062 PCIF1Q9H4Z3 704 aa15.33■□□□□ 0.04
TRIM4-201ENST00000349062 KCNMB3Q9NPA1 279 aa15.33■□□□□ 0.04
TRIM4-201ENST00000349062 SMARCAL1Q9NZC9 954 aa15.33■□□□□ 0.04
TRIM4-201ENST00000349062 CNOT7Q9UIV1 285 aaKnown RBP15.33■□□□□ 0.04
TRIM4-201ENST00000349062 COL4A3BPQ9Y5P4 624 aa15.33■□□□□ 0.04
TRIM4-201ENST00000349062 SPATA31C1P0DKV0 1188 aa15.32■□□□□ 0.04
TRIM4-201ENST00000349062 CYLC1P35663 651 aaPredicted RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms