RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 VAMP4O75379 141 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 TADA3O75528 432 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 CKMP06732 381 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 CRKP46108 304 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 ZNF165P49910 485 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 PDE4CQ08493 712 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 SCRN1Q12765 414 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 FOXL1Q12952 345 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 GRB10Q13322 594 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 NFYCQ13952 458 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 USP10Q14694 798 aaKnown RBP1.28□□□□□ -2.2
VPS35-212ENST00000640313 PPP2R5DQ14738 602 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 GRM7Q14831 915 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 CHRNA2Q15822 529 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 ZNF568Q3ZCX4 644 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 TDRD10Q5VZ19 366 aaKnown RBP1.28□□□□□ -2.2
VPS35-212ENST00000640313 MBNL2Q5VZF2 373 aaKnown RBP1.28□□□□□ -2.2
VPS35-212ENST00000640313 MBLAC2Q68D91 279 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 GK5Q6ZS86 529 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 ADGRE4PQ86SQ3 457 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 PROSER1Q86XN7 944 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 TEX2Q8IWB9 1127 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 THEMISQ8N1K5 641 aaPredicted RBP1.28□□□□□ -2.2
VPS35-212ENST00000640313 DTX3Q8N9I9 347 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 ARRDC4Q8NCT1 418 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 OR14A2Q96R54 314 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 PLA2G12BQ9BX93 195 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 CARD11Q9BXL7 1154 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 KRTAP2-2Q9BYT5 123 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 TLR9Q9NR96 1032 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 PLA2G3Q9NZ20 509 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 GPRC5BQ9NZH0 403 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 WHRNQ9P202 907 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 GIT1Q9Y2X7 761 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 SUPT16HQ9Y5B9 1047 aaKnown RBP1.28□□□□□ -2.2
VPS35-212ENST00000640313 COX11Q9Y6N1 276 aa1.28□□□□□ -2.2
VPS35-212ENST00000640313 COL4A3Q01955 1670 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 SUPT5HO00267 1087 aaKnown RBP1.27□□□□□ -2.21
VPS35-212ENST00000640313 MATN2O00339 956 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 IKBKBO14920 756 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 CYP27B1O15528 508 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 SLC24A1O60721 1099 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 CDC14BO60729 498 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 CUTAO60888 179 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 TP53P04637 393 aaPredicted RBP1.27□□□□□ -2.21
VPS35-212ENST00000640313 ZNF888P0CJ79 500 aaPredicted RBP1.27□□□□□ -2.21
VPS35-212ENST00000640313 POU3F3P20264 500 aaPredicted RBP1.27□□□□□ -2.21
VPS35-212ENST00000640313 EIF4A3P38919 411 aaKnown RBP1.27□□□□□ -2.21
VPS35-212ENST00000640313 GTF2A2P52657 109 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 SLC25A3Q00325 362 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 AMPD2Q01433 879 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 HHEXQ03014 270 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 RNF151Q2KHN1 245 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 DPY19L1Q2PZI1 675 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 SEZ6Q53EL9 994 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 ZMAT1Q5H9K5 638 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 EMC4Q5J8M3 183 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 STRIP1Q5VSL9 837 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 TMC5Q6UXY8 1006 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 GPR155Q7Z3F1 870 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 GRASPQ7Z6J2 395 aaPredicted RBP1.27□□□□□ -2.21
VPS35-212ENST00000640313 MRGPREQ86SM8 312 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 ARHGEF39Q8N4T4 335 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 ZNF296Q8WUU4 475 aaPredicted RBP1.27□□□□□ -2.21
VPS35-212ENST00000640313 COPS5Q92905 334 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 RNF34Q969K3 372 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 RCC1LQ96I51 464 aaKnown RBP1.27□□□□□ -2.21
VPS35-212ENST00000640313 TM9SF2Q99805 663 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 DPYSL5Q9BPU6 564 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 NELFAQ9H3P2 528 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 SYNPO2LQ9H987 977 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 KCND1Q9NSA2 647 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 ZNF214Q9UL59 606 aaPredicted RBP1.27□□□□□ -2.21
VPS35-212ENST00000640313 PTPN22Q9Y2R2 807 aa1.27□□□□□ -2.21
VPS35-212ENST00000640313 TIMM13Q9Y5L4 95 aaPredicted RBP1.27□□□□□ -2.21
VPS35-212ENST00000640313 COL11A2P13942 1736 aaPredicted RBP1.26□□□□□ -2.21
VPS35-212ENST00000640313 PMS2P1A4D2B8 440 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 FAM86C2PA6NEL3 165 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 FBXO21O94952 628 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 IMPDH2P12268 514 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 PLS3P13797 630 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 POLD1P28340 1107 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 MCM4P33991 863 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 PTGS2P35354 604 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 MSX2P35548 267 aaPredicted RBP1.26□□□□□ -2.21
VPS35-212ENST00000640313 RPL11P62913 178 aaKnown RBP1.26□□□□□ -2.21
VPS35-212ENST00000640313 PSMD2Q13200 908 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 RRP1BQ14684 758 aaKnown RBP1.26□□□□□ -2.21
VPS35-212ENST00000640313 PCOLCEQ15113 449 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 GPR162Q16538 588 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 INF2Q27J81 1249 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 SPTY2D1Q68D10 685 aaPredicted RBP1.26□□□□□ -2.21
VPS35-212ENST00000640313 VASNQ6EMK4 673 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 IQCEQ6IPM2 695 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 OLFML1Q6UWY5 402 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 UNC5AQ6ZN44 842 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 CEP68Q76N32 757 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 RHOUQ7L0Q8 258 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 ERMP1Q7Z2K6 904 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 TMC4Q7Z404 712 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms