RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 REXO1L1PQ8IX06 675 aa18.76■□□□□ 0.59
CPSF4-201ENST00000292476 MB21D1Q8N884 522 aa18.76■□□□□ 0.59
CPSF4-201ENST00000292476 ATG4CQ96DT6 458 aa18.76■□□□□ 0.59
CPSF4-201ENST00000292476 PANX2Q96RD6 677 aa18.76■□□□□ 0.59
CPSF4-201ENST00000292476 BAG1Q99933 345 aaPredicted RBP18.76■□□□□ 0.59
CPSF4-201ENST00000292476 NAA15Q9BXJ9 866 aaKnown RBP18.76■□□□□ 0.59
CPSF4-201ENST00000292476 RNF186Q9NXI6 227 aa18.76■□□□□ 0.59
CPSF4-201ENST00000292476 MANSC4A6NHS7 340 aaPredicted RBP18.75■□□□□ 0.59
CPSF4-201ENST00000292476 HSPA8P11142 646 aaKnown RBP18.75■□□□□ 0.59
CPSF4-201ENST00000292476 HOXA7P31268 230 aaPredicted RBP18.75■□□□□ 0.59
CPSF4-201ENST00000292476 LBX1P52954 281 aa18.75■□□□□ 0.59
CPSF4-201ENST00000292476 DGKZQ13574 1117 aa18.75■□□□□ 0.59
CPSF4-201ENST00000292476 FASTKD5Q7L8L6 764 aaKnown RBP18.75■□□□□ 0.59
CPSF4-201ENST00000292476 REM2Q8IYK8 340 aaPredicted RBP18.75■□□□□ 0.59
CPSF4-201ENST00000292476 TC2NQ8N9U0 490 aa18.75■□□□□ 0.59
CPSF4-201ENST00000292476 TRERF1Q96PN7 1200 aa18.75■□□□□ 0.59
CPSF4-201ENST00000292476 MED15Q96RN5 788 aa18.75■□□□□ 0.59
CPSF4-201ENST00000292476 KCNMB3Q9NPA1 279 aa18.75■□□□□ 0.59
CPSF4-201ENST00000292476 RMND1Q9NWS8 449 aa18.75■□□□□ 0.59
CPSF4-201ENST00000292476 OGFRQ9NZT2 677 aa18.75■□□□□ 0.59
CPSF4-201ENST00000292476 A0A0G2JLL6 359 aaPredicted RBP18.74■□□□□ 0.59
CPSF4-201ENST00000292476 IRF6O14896 467 aa18.74■□□□□ 0.59
CPSF4-201ENST00000292476 GTPBP6O43824 516 aaPredicted RBP18.74■□□□□ 0.59
CPSF4-201ENST00000292476 TM4SF4P48230 202 aa18.74■□□□□ 0.59
CPSF4-201ENST00000292476 AMPD3Q01432 767 aa18.74■□□□□ 0.59
CPSF4-201ENST00000292476 TRIM65Q6PJ69 517 aa18.74■□□□□ 0.59
CPSF4-201ENST00000292476 PRRT2Q7Z6L0 340 aaPredicted RBP18.74■□□□□ 0.59
CPSF4-201ENST00000292476 CLEC4DQ8WXI8 215 aa18.74■□□□□ 0.59
CPSF4-201ENST00000292476 CDK5RAP3Q96JB5 506 aa18.74■□□□□ 0.59
CPSF4-201ENST00000292476 TEX13BQ9BXU2 312 aa18.74■□□□□ 0.59
CPSF4-201ENST00000292476 KCNH4Q9UQ05 1017 aa18.74■□□□□ 0.59
CPSF4-201ENST00000292476 PRKCSHP14314 528 aaPredicted RBP18.73■□□□□ 0.59
CPSF4-201ENST00000292476 SETQ01105 290 aaPredicted RBP18.73■□□□□ 0.59
CPSF4-201ENST00000292476 PRR16Q569H4 304 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 APTXQ7Z2E3 356 aaKnown RBP18.73■□□□□ 0.59
CPSF4-201ENST00000292476 TRMT44Q8IYL2 757 aaKnown RBP18.73■□□□□ 0.59
CPSF4-201ENST00000292476 HAS1Q92839 578 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 GTPBP4Q9BZE4 634 aaKnown RBP18.73■□□□□ 0.59
CPSF4-201ENST00000292476 LRRC27Q9C0I9 530 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 STK17AQ9UEE5 414 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 PPP2R2CQ9Y2T4 447 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.73■□□□□ 0.594e-6■□□□□ 10.1
CPSF4-201ENST00000292476 MYH7BA7E2Y1 1941 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 ITIH6Q6UXX5 1313 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 KDM3AQ9Y4C1 1321 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 PPP1R3GB7ZBB8 358 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 CA12O43570 354 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 SPAG1Q07617 926 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 KARSQ15046 597 aaKnown RBP18.73■□□□□ 0.59
CPSF4-201ENST00000292476 FILIP1LQ4L180 1135 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 PDXDC2PQ6P474 469 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 REPS2Q8NFH8 660 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 ERMNQ8TAM6 284 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 MS4A4AQ96JQ5 239 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 NT5C3AQ9H0P0 336 aa18.73■□□□□ 0.59
CPSF4-201ENST00000292476 SAMSN1Q9NSI8 373 aaKnown RBP18.73■□□□□ 0.59
CPSF4-201ENST00000292476 IGF2BP3O00425 579 aaKnown RBP eCLIP18.72■□□□□ 0.59
CPSF4-201ENST00000292476 PBX1P40424 430 aa18.72■□□□□ 0.59
CPSF4-201ENST00000292476 AFMP43652 599 aa18.72■□□□□ 0.59
CPSF4-201ENST00000292476 HAUS3Q68CZ6 603 aa18.72■□□□□ 0.59
CPSF4-201ENST00000292476 SNRNP48Q6IEG0 339 aaKnown RBP18.72■□□□□ 0.59
CPSF4-201ENST00000292476 XRRA1Q6P2D8 792 aa18.72■□□□□ 0.59
CPSF4-201ENST00000292476 RNF207Q6ZRF8 634 aa18.72■□□□□ 0.59
CPSF4-201ENST00000292476 KCTD17Q8N5Z5 321 aa18.72■□□□□ 0.59
CPSF4-201ENST00000292476 TBC1D5Q92609 795 aa18.72■□□□□ 0.59
CPSF4-201ENST00000292476 CCDC51Q96ER9 411 aa18.72■□□□□ 0.59
CPSF4-201ENST00000292476 P2RX7Q99572 595 aaKnown RBP18.72■□□□□ 0.59
CPSF4-201ENST00000292476 ADD3Q9UEY8 706 aaKnown RBP18.72■□□□□ 0.59
CPSF4-201ENST00000292476 DNAI1Q9UI46 699 aa18.72■□□□□ 0.59
CPSF4-201ENST00000292476 CCL15-CCL14A0A0B4J2E2 113 aa18.71■□□□□ 0.59
CPSF4-201ENST00000292476 SPDYE16A6NNV3 312 aaPredicted RBP18.71■□□□□ 0.59
CPSF4-201ENST00000292476 AKR1B15C9JRZ8 316 aaPredicted RBP18.71■□□□□ 0.59
CPSF4-201ENST00000292476 NFIBO00712 420 aa18.71■□□□□ 0.59
CPSF4-201ENST00000292476 CDC25AP30304 524 aa18.71■□□□□ 0.59
CPSF4-201ENST00000292476 STAT3P40763 770 aa18.71■□□□□ 0.59
CPSF4-201ENST00000292476 GTF2A2P52657 109 aa18.71■□□□□ 0.59
CPSF4-201ENST00000292476 IRX3P78415 501 aaPredicted RBP18.71■□□□□ 0.59
CPSF4-201ENST00000292476 CCL15Q16663 113 aa18.71■□□□□ 0.59
CPSF4-201ENST00000292476 CEP55Q53EZ4 464 aa18.71■□□□□ 0.59
CPSF4-201ENST00000292476 GADL1Q6ZQY3 521 aa18.71■□□□□ 0.59
CPSF4-201ENST00000292476 NIPA1Q7RTP0 329 aa18.71■□□□□ 0.59
CPSF4-201ENST00000292476 IFNL1Q8IU54 200 aa18.71■□□□□ 0.59
CPSF4-201ENST00000292476 ETNPPLQ8TBG4 499 aa18.71■□□□□ 0.59
CPSF4-201ENST00000292476 PTPN18Q99952 460 aa18.71■□□□□ 0.59
CPSF4-201ENST00000292476 RNF146Q9NTX7 359 aa18.71■□□□□ 0.59
CPSF4-201ENST00000292476 RWDD2AQ9UIY3 292 aa18.71■□□□□ 0.59
CPSF4-201ENST00000292476 DDX41Q9UJV9 622 aaKnown RBP18.71■□□□□ 0.59
CPSF4-201ENST00000292476 ZNF214Q9UL59 606 aaPredicted RBP18.71■□□□□ 0.59
CPSF4-201ENST00000292476 AGTPBP1Q9UPW5 1226 aa18.71■□□□□ 0.59
CPSF4-201ENST00000292476 FAM86B1E9PN63 330 aa18.7■□□□□ 0.58
CPSF4-201ENST00000292476 FAM86B2P0C5J1 330 aa18.7■□□□□ 0.58
CPSF4-201ENST00000292476 CD44P16070 742 aaKnown RBP18.7■□□□□ 0.58
CPSF4-201ENST00000292476 TAL1P17542 331 aaPredicted RBP18.7■□□□□ 0.58
CPSF4-201ENST00000292476 INHBEP58166 350 aa18.7■□□□□ 0.58
CPSF4-201ENST00000292476 LBX2Q6XYB7 198 aa18.7■□□□□ 0.58
CPSF4-201ENST00000292476 CHST13Q8NET6 341 aa18.7■□□□□ 0.58
CPSF4-201ENST00000292476 SNX29Q8TEQ0 813 aa18.7■□□□□ 0.58
CPSF4-201ENST00000292476 BRI3BPQ8WY22 251 aa18.7■□□□□ 0.58
CPSF4-201ENST00000292476 CCDC47Q96A33 483 aaKnown RBP18.7■□□□□ 0.58
CPSF4-201ENST00000292476 ACAD9Q9H845 621 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms