RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 GRID2IPA4D2P6 1211 aa21.6■■□□□ 1.05
PDLIM3-212ENST00000620787 GNA11P29992 359 aa21.6■■□□□ 1.05
PDLIM3-212ENST00000620787 EHHADHQ08426 723 aa21.6■■□□□ 1.05
PDLIM3-212ENST00000620787 ORC2Q13416 577 aaPredicted RBP21.6■■□□□ 1.05
PDLIM3-212ENST00000620787 SH3RF3Q8TEJ3 882 aaPredicted RBP21.6■■□□□ 1.05
PDLIM3-212ENST00000620787 CEP89Q96ST8 783 aa21.6■■□□□ 1.05
PDLIM3-212ENST00000620787 POLD4Q9HCU8 107 aa21.6■■□□□ 1.05
PDLIM3-212ENST00000620787 NLRC4Q9NPP4 1024 aa21.6■■□□□ 1.05
PDLIM3-212ENST00000620787 CEP72Q9P209 647 aa21.6■■□□□ 1.05
PDLIM3-212ENST00000620787 FTCDO95954 541 aa21.6■■□□□ 1.05
PDLIM3-212ENST00000620787 NAB2Q15742 525 aa21.6■■□□□ 1.05
PDLIM3-212ENST00000620787 INPP4AQ96PE3 977 aaPredicted RBP21.6■■□□□ 1.05
PDLIM3-212ENST00000620787 PAGR1Q9BTK6 254 aa21.6■■□□□ 1.05
PDLIM3-212ENST00000620787 EPN3Q9H201 632 aa21.6■■□□□ 1.05
PDLIM3-212ENST00000620787 CDK5RAP2Q96SN8 1893 aa21.6■■□□□ 1.05
PDLIM3-212ENST00000620787 SERPING1P05155 500 aa21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 GUCY2FP51841 1108 aa21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 GUCY1A3Q02108 690 aa21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 SLC9C1Q4G0N8 1177 aa21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 SPATS2Q86XZ4 545 aaKnown RBP21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 ZNF444Q8N0Y2 327 aaPredicted RBP21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 PRPF38AQ8NAV1 312 aaKnown RBP21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 SYN2Q92777 582 aaPredicted RBP21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 KRT12Q99456 494 aa21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 TANGO6Q9C0B7 1094 aa21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 NR1D1P20393 614 aa21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 RASA1P20936 1047 aa21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 FNTAP49354 379 aa21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 FXR2P51116 673 aaKnown RBP eCLIP21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 LRRC41Q15345 812 aa21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 MEI1Q5TIA1 1274 aa21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 SFMBT2Q5VUG0 894 aa21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 FOXR2Q6PJQ5 311 aa21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 RAD54LQ92698 747 aa21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 BIN2Q9UBW5 565 aaPredicted RBP21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 PCDHGC5Q9Y5F6 944 aa21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 COL5A3P25940 1745 aaPredicted RBP21.59■■□□□ 1.05
PDLIM3-212ENST00000620787 MEFVO15553 781 aaPredicted RBP21.58■■□□□ 1.05
PDLIM3-212ENST00000620787 ZPR1O75312 459 aa21.58■■□□□ 1.05
PDLIM3-212ENST00000620787 KLRC1P26715 233 aa21.58■■□□□ 1.05
PDLIM3-212ENST00000620787 DNA2P51530 1060 aa21.58■■□□□ 1.05
PDLIM3-212ENST00000620787 ZCWPW2Q504Y3 356 aa21.58■■□□□ 1.05
PDLIM3-212ENST00000620787 FAM83BQ5T0W9 1011 aa21.58■■□□□ 1.05
PDLIM3-212ENST00000620787 NAA35Q5VZE5 725 aa21.58■■□□□ 1.05
PDLIM3-212ENST00000620787 CLEC4GQ6UXB4 293 aa21.58■■□□□ 1.05
PDLIM3-212ENST00000620787 TXNRD3Q86VQ6 643 aa21.58■■□□□ 1.05
PDLIM3-212ENST00000620787 C1orf131Q8NDD1 294 aaKnown RBP21.58■■□□□ 1.05
PDLIM3-212ENST00000620787 TSG101Q99816 390 aa21.58■■□□□ 1.05
PDLIM3-212ENST00000620787 RIC8AQ9NPQ8 531 aa21.58■■□□□ 1.05
PDLIM3-212ENST00000620787 TMEM260Q9NX78 707 aa21.58■■□□□ 1.05
PDLIM3-212ENST00000620787 TRADDQ15628 312 aa21.58■■□□□ 1.04
PDLIM3-212ENST00000620787 CALCRLQ16602 461 aa21.58■■□□□ 1.04
PDLIM3-212ENST00000620787 PROM2Q8N271 834 aa21.58■■□□□ 1.04
PDLIM3-212ENST00000620787 WHAMMQ8TF30 809 aa21.58■■□□□ 1.04
PDLIM3-212ENST00000620787 ACSBG1Q96GR2 724 aa21.58■■□□□ 1.04
PDLIM3-212ENST00000620787 CDK5RAP3Q96JB5 506 aa21.58■■□□□ 1.04
PDLIM3-212ENST00000620787 NUCKS1Q9H1E3 243 aaKnown RBP21.58■■□□□ 1.04
PDLIM3-212ENST00000620787 DNAJC5Q9H3Z4 198 aa21.58■■□□□ 1.04
PDLIM3-212ENST00000620787 ATP6V0A2Q9Y487 856 aa21.58■■□□□ 1.04
PDLIM3-212ENST00000620787 SBF2Q86WG5 1849 aa21.57■■□□□ 1.04
PDLIM3-212ENST00000620787 SNED1Q8TER0 1413 aa21.57■■□□□ 1.04
PDLIM3-212ENST00000620787 FSBPO95073 299 aa21.57■■□□□ 1.04
PDLIM3-212ENST00000620787 RPS8P62241 208 aaKnown RBP21.57■■□□□ 1.04
PDLIM3-212ENST00000620787 CDC37Q16543 378 aaPredicted RBP21.57■■□□□ 1.04
PDLIM3-212ENST00000620787 PTGISQ16647 500 aa21.57■■□□□ 1.04
PDLIM3-212ENST00000620787 SOGA3Q5TF21 947 aa21.57■■□□□ 1.04
PDLIM3-212ENST00000620787 KCNK18Q7Z418 384 aa21.57■■□□□ 1.04
PDLIM3-212ENST00000620787 REXO1Q8N1G1 1221 aaKnown RBP21.57■■□□□ 1.04
PDLIM3-212ENST00000620787 DDX12PQ92771 950 aa21.57■■□□□ 1.04
PDLIM3-212ENST00000620787 ATP6V1G3Q96LB4 118 aa21.57■■□□□ 1.04
PDLIM3-212ENST00000620787 COL4A3BPQ9Y5P4 624 aa21.57■■□□□ 1.04
PDLIM3-212ENST00000620787 CAPN7Q9Y6W3 813 aa21.57■■□□□ 1.04
PDLIM3-212ENST00000620787 DDX60LQ5H9U9 1706 aaKnown RBP21.57■■□□□ 1.04
PDLIM3-212ENST00000620787 SLC37A4O43826 429 aa21.56■■□□□ 1.04
PDLIM3-212ENST00000620787 PPP1R37O75864 691 aa21.56■■□□□ 1.04
PDLIM3-212ENST00000620787 KIAA0754O94854 1291 aa21.56■■□□□ 1.04
PDLIM3-212ENST00000620787 MYBP10242 640 aa21.56■■□□□ 1.04
PDLIM3-212ENST00000620787 PSMD2Q13200 908 aa21.56■■□□□ 1.04
PDLIM3-212ENST00000620787 SPTY2D1Q68D10 685 aaPredicted RBP21.56■■□□□ 1.04
PDLIM3-212ENST00000620787 NUDT12Q9BQG2 462 aa21.56■■□□□ 1.04
PDLIM3-212ENST00000620787 LSM14BQ9BX40 385 aaKnown RBP21.56■■□□□ 1.04
PDLIM3-212ENST00000620787 GEMIN8Q9NWZ8 242 aaKnown RBP21.56■■□□□ 1.04
PDLIM3-212ENST00000620787 PACSIN2Q9UNF0 486 aaPredicted RBP21.56■■□□□ 1.04
PDLIM3-212ENST00000620787 POTEMA6NI47 508 aa21.56■■□□□ 1.04
PDLIM3-212ENST00000620787 EDIL3O43854 480 aa21.56■■□□□ 1.04
PDLIM3-212ENST00000620787 HOXA7P31268 230 aaPredicted RBP21.56■■□□□ 1.04
PDLIM3-212ENST00000620787 USP17L2Q6R6M4 530 aa21.56■■□□□ 1.04
PDLIM3-212ENST00000620787 OTUD6BQ8N6M0 293 aa21.56■■□□□ 1.04
PDLIM3-212ENST00000620787 ZNF473Q8WTR7 871 aaKnown RBP21.56■■□□□ 1.04
PDLIM3-212ENST00000620787 RAD51CO43502 376 aa21.55■■□□□ 1.04
PDLIM3-212ENST00000620787 HSPA9P38646 679 aaKnown RBP21.55■■□□□ 1.04
PDLIM3-212ENST00000620787 SLC18A3Q16572 532 aa21.55■■□□□ 1.04
PDLIM3-212ENST00000620787 TMEM119Q4V9L6 283 aa21.55■■□□□ 1.04
PDLIM3-212ENST00000620787 TBC1D5Q92609 795 aa21.55■■□□□ 1.04
PDLIM3-212ENST00000620787 PIGSQ96S52 555 aa21.55■■□□□ 1.04
PDLIM3-212ENST00000620787 LUC7LQ9NQ29 371 aaKnown RBP21.55■■□□□ 1.04
PDLIM3-212ENST00000620787 IRS2Q9Y4H2 1338 aa21.55■■□□□ 1.04
PDLIM3-212ENST00000620787 POLR2FP61218 127 aaKnown RBP21.55■■□□□ 1.04
PDLIM3-212ENST00000620787 TMEM266Q2M3C6 531 aa21.55■■□□□ 1.04
PDLIM3-212ENST00000620787 SLC10A5Q5PT55 438 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms