RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 PPP2R5DQ14738 602 aa8.53□□□□□ -1.04
RTF1-204ENST00000558117 MLANAQ16655 118 aa8.53□□□□□ -1.04
RTF1-204ENST00000558117 CEP128Q6ZU80 1094 aa8.53□□□□□ -1.04
RTF1-204ENST00000558117 LIN37Q96GY3 246 aaPredicted RBP8.53□□□□□ -1.04
RTF1-204ENST00000558117 G6PC3Q9BUM1 346 aa8.53□□□□□ -1.04
RTF1-204ENST00000558117 AP5S1Q9NUS5 200 aa8.53□□□□□ -1.04
RTF1-204ENST00000558117 USP35Q9P2H5 1018 aa8.53□□□□□ -1.04
RTF1-204ENST00000558117 APEX2Q9UBZ4 518 aa8.53□□□□□ -1.04
RTF1-204ENST00000558117 DIS3Q9Y2L1 958 aaKnown RBP8.53□□□□□ -1.04
RTF1-204ENST00000558117 ZNF503-AS2A6NEH8 195 aa8.52□□□□□ -1.05
RTF1-204ENST00000558117 FOXN1O15353 648 aa8.52□□□□□ -1.05
RTF1-204ENST00000558117 OGFOD2Q6N063 350 aa8.52□□□□□ -1.05
RTF1-204ENST00000558117 APBA2Q99767 749 aa8.52□□□□□ -1.05
RTF1-204ENST00000558117 LGR4Q9BXB1 951 aa8.52□□□□□ -1.05
RTF1-204ENST00000558117 RNF32Q9H0A6 362 aa8.52□□□□□ -1.05
RTF1-204ENST00000558117 CWC22Q9HCG8 908 aaKnown RBP8.52□□□□□ -1.05
RTF1-204ENST00000558117 TNFRSF10DQ9UBN6 386 aa8.52□□□□□ -1.05
RTF1-204ENST00000558117 OVOS2A0A0G2JMS6 1433 aa8.52□□□□□ -1.05
RTF1-204ENST00000558117 OVOS2A0A0J9YW53 1432 aa8.52□□□□□ -1.05
RTF1-204ENST00000558117 OVOS2Q6IE36 1432 aa8.52□□□□□ -1.05
RTF1-204ENST00000558117 ARHGEF28Q8N1W1 1705 aaKnown RBP8.51□□□□□ -1.05
RTF1-204ENST00000558117 PEAK1Q9H792 1746 aa8.51□□□□□ -1.05
RTF1-204ENST00000558117 TULP4Q9NRJ4 1543 aa8.51□□□□□ -1.05
RTF1-204ENST00000558117 VAMP4O75379 141 aa8.51□□□□□ -1.05
RTF1-204ENST00000558117 CD3EP07766 207 aa8.51□□□□□ -1.05
RTF1-204ENST00000558117 RBL2Q08999 1139 aa8.51□□□□□ -1.05
RTF1-204ENST00000558117 SNX17Q15036 470 aa8.51□□□□□ -1.05
RTF1-204ENST00000558117 SF3A1Q15459 793 aaKnown RBP8.51□□□□□ -1.05
RTF1-204ENST00000558117 DDR2Q16832 855 aa8.51□□□□□ -1.05
RTF1-204ENST00000558117 CKAP2LQ8IYA6 745 aa8.51□□□□□ -1.05
RTF1-204ENST00000558117 SREK1Q8WXA9 508 aaKnown RBP8.51□□□□□ -1.05
RTF1-204ENST00000558117 HHIPL1Q96JK4 782 aa8.51□□□□□ -1.05
RTF1-204ENST00000558117 ERVK13-1Q9NX77 482 aa8.51□□□□□ -1.05
RTF1-204ENST00000558117 GPR55Q9Y2T6 319 aaPredicted RBP8.51□□□□□ -1.05
RTF1-204ENST00000558117 TAF6LQ9Y6J9 622 aa8.51□□□□□ -1.05
RTF1-204ENST00000558117 NAIPQ13075 1403 aa8.51□□□□□ -1.05
RTF1-204ENST00000558117 ZNF143P52747 638 aaPredicted RBP8.5□□□□□ -1.05
RTF1-204ENST00000558117 ZNF827Q17R98 1081 aa8.5□□□□□ -1.05
RTF1-204ENST00000558117 COL24A1Q17RW2 1714 aa8.5□□□□□ -1.05
RTF1-204ENST00000558117 ARHGEF39Q8N4T4 335 aa8.5□□□□□ -1.05
RTF1-204ENST00000558117 CRACR2BQ8N4Y2 399 aaPredicted RBP8.5□□□□□ -1.05
RTF1-204ENST00000558117 PPP1R14AQ96A00 147 aa8.5□□□□□ -1.05
RTF1-204ENST00000558117 MCMBPQ9BTE3 642 aa8.5□□□□□ -1.05
RTF1-204ENST00000558117 SLC12A9Q9BXP2 914 aa8.5□□□□□ -1.05
RTF1-204ENST00000558117 SLC6A17Q9H1V8 727 aa8.5□□□□□ -1.05
RTF1-204ENST00000558117 PRDM11Q9NQV5 511 aa8.5□□□□□ -1.05
RTF1-204ENST00000558117 CGGBP1Q9UFW8 167 aaPredicted RBP8.5□□□□□ -1.05
RTF1-204ENST00000558117 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.49□□□□□ -1.05
RTF1-204ENST00000558117 NRDCO43847 1150 aa8.49□□□□□ -1.05
RTF1-204ENST00000558117 SUSD5O60279 629 aa8.49□□□□□ -1.05
RTF1-204ENST00000558117 FARP2O94887 1054 aaPredicted RBP8.49□□□□□ -1.05
RTF1-204ENST00000558117 RTP1P59025 263 aa8.49□□□□□ -1.05
RTF1-204ENST00000558117 TIGD5Q53EQ6 642 aa8.49□□□□□ -1.05
RTF1-204ENST00000558117 RTP2Q5QGT7 225 aa8.49□□□□□ -1.05
RTF1-204ENST00000558117 CYP2R1Q6VVX0 501 aa8.49□□□□□ -1.05
RTF1-204ENST00000558117 TCP11L2Q8N4U5 519 aa8.49□□□□□ -1.05
RTF1-204ENST00000558117 PMFBP1Q8TBY8 1022 aa8.49□□□□□ -1.05
RTF1-204ENST00000558117 ARMC5Q96C12 935 aa8.49□□□□□ -1.05
RTF1-204ENST00000558117 RCC1LQ96I51 464 aaKnown RBP8.49□□□□□ -1.05
RTF1-204ENST00000558117 FCRL3Q96P31 734 aaPredicted RBP8.49□□□□□ -1.05
RTF1-204ENST00000558117 KRTAP4-8Q9BYQ9 185 aa8.49□□□□□ -1.05
RTF1-204ENST00000558117 TRIM55Q9BYV6 548 aa8.49□□□□□ -1.05
RTF1-204ENST00000558117 NSUN3Q9H649 340 aaKnown RBP8.49□□□□□ -1.05
RTF1-204ENST00000558117 SP110Q9HB58 689 aa8.49□□□□□ -1.05
RTF1-204ENST00000558117 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.49□□□□□ -1.05
RTF1-204ENST00000558117 AKT3Q9Y243 479 aa8.49□□□□□ -1.05
RTF1-204ENST00000558117 KIF1AQ12756 1690 aa8.49□□□□□ -1.05
RTF1-204ENST00000558117 CCDC85CA6NKD9 419 aa8.48□□□□□ -1.05
RTF1-204ENST00000558117 PSPNO60542 156 aa8.48□□□□□ -1.05
RTF1-204ENST00000558117 AMPD2Q01433 879 aa8.48□□□□□ -1.05
RTF1-204ENST00000558117 GALNT18Q6P9A2 607 aa8.48□□□□□ -1.05
RTF1-204ENST00000558117 PRR23BQ6ZRT6 265 aa8.48□□□□□ -1.05
RTF1-204ENST00000558117 POU5F2Q8N7G0 328 aa8.48□□□□□ -1.05
RTF1-204ENST00000558117 BVESQ8NE79 360 aa8.48□□□□□ -1.05
RTF1-204ENST00000558117 DIRC2Q96SL1 478 aa8.48□□□□□ -1.05
RTF1-204ENST00000558117 SLC38A3Q99624 504 aa8.48□□□□□ -1.05
RTF1-204ENST00000558117 IQGAP3Q86VI3 1631 aa8.47□□□□□ -1.05
RTF1-204ENST00000558117 PHRF1Q9P1Y6 1649 aaKnown RBP8.47□□□□□ -1.05
RTF1-204ENST00000558117 ATP7BP35670 1465 aa8.47□□□□□ -1.05
RTF1-204ENST00000558117 WTIPA6NIX2 430 aaPredicted RBP8.47□□□□□ -1.05
RTF1-204ENST00000558117 FADS2P1A8MWK0 482 aa8.47□□□□□ -1.05
RTF1-204ENST00000558117 NOP56O00567 594 aaKnown RBP8.47□□□□□ -1.05
RTF1-204ENST00000558117 IFNGR1P15260 489 aa8.47□□□□□ -1.05
RTF1-204ENST00000558117 GRB10Q13322 594 aa8.47□□□□□ -1.05
RTF1-204ENST00000558117 DPY19L1Q2PZI1 675 aa8.47□□□□□ -1.05
RTF1-204ENST00000558117 SV2CQ496J9 727 aa8.47□□□□□ -1.05
RTF1-204ENST00000558117 POMZP3Q6PJE2 187 aa8.47□□□□□ -1.05
RTF1-204ENST00000558117 JAMLQ86YT9 394 aa8.47□□□□□ -1.05
RTF1-204ENST00000558117 INTS4Q96HW7 963 aaKnown RBP8.47□□□□□ -1.05
RTF1-204ENST00000558117 HIRIP3Q9BW71 556 aaPredicted RBP8.47□□□□□ -1.05
RTF1-204ENST00000558117 EPB41L4BQ9H329 900 aa8.47□□□□□ -1.05
RTF1-204ENST00000558117 YBX2Q9Y2T7 364 aaKnown RBP8.47□□□□□ -1.05
RTF1-204ENST00000558117 EMC9Q9Y3B6 208 aa8.47□□□□□ -1.05
RTF1-204ENST00000558117 SBF2Q86WG5 1849 aa8.47□□□□□ -1.05
RTF1-204ENST00000558117 PAPPAQ13219 1627 aa8.47□□□□□ -1.05
RTF1-204ENST00000558117 SSH2Q76I76 1423 aa8.46□□□□□ -1.05
RTF1-204ENST00000558117 A0A1W2PQ27 194 aa8.46□□□□□ -1.06
RTF1-204ENST00000558117 A0A1W2PQ45 241 aaPredicted RBP8.46□□□□□ -1.06
RTF1-204ENST00000558117 A0A1W2PQ64 194 aa8.46□□□□□ -1.06
RTF1-204ENST00000558117 A0A1W2PQC6 194 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms