RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 INO80BQ9C086 356 aaPredicted RBP8.5□□□□□ -1.05
VPS13D-211ENST00000543710 ATP11BQ9Y2G3 1177 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 PPP2R3BQ9Y5P8 575 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 RPLP2P05387 115 aaKnown RBP8.5□□□□□ -1.05
VPS13D-211ENST00000543710 ASNSP08243 561 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 RSAD2Q8WXG1 361 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 MXD3Q9BW11 206 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 LSG1Q9H089 658 aaKnown RBP8.5□□□□□ -1.05
VPS13D-211ENST00000543710 CCDC68Q9H2F9 335 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 CDC23Q9UJX2 597 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 TNNQ9UQP3 1299 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 SPATA31A1Q5TZJ5 1347 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 SUN1O94901 812 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 MYBL1P10243 752 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 USP17L2Q6R6M4 530 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 NEK8Q86SG6 692 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 HMX1Q9NP08 348 aaPredicted RBP8.49□□□□□ -1.05
VPS13D-211ENST00000543710 COPRSQ9NQ92 184 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 PANK4Q9NVE7 773 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 PA2G4Q9UQ80 394 aaKnown RBP8.49□□□□□ -1.05
VPS13D-211ENST00000543710 PSMC4P43686 418 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 GCLCP48506 637 aaPredicted RBP8.49□□□□□ -1.05
VPS13D-211ENST00000543710 ILF2Q12905 390 aaKnown RBP8.49□□□□□ -1.05
VPS13D-211ENST00000543710 LETM2Q2VYF4 491 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 ARHGEF18Q6ZSZ5 1173 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 RNF168Q8IYW5 571 aaPredicted RBP8.49□□□□□ -1.05
VPS13D-211ENST00000543710 PPP1R13BQ96KQ4 1090 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 IRF2BPLQ9H1B7 796 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 LRRIQ1Q96JM4 1722 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 IGBP1P78318 339 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 PLCB3Q01970 1234 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 GOLGA8FQ08AF8 430 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 DMWDQ09019 674 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 GOLGA8DPQ0D2H9 430 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 TEDDM1Q5T9Z0 273 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 RAB44Q7Z6P3 723 aaPredicted RBP8.49□□□□□ -1.05
VPS13D-211ENST00000543710 MAP7D3Q8IWC1 876 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 TRIM56Q9BRZ2 755 aaKnown RBP8.49□□□□□ -1.05
VPS13D-211ENST00000543710 CARD6Q9BX69 1037 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 MRPL44Q9H9J2 332 aaKnown RBP8.49□□□□□ -1.05
VPS13D-211ENST00000543710 NUB1Q9Y5A7 615 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 NRKQ7Z2Y5 1582 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 RLBP1P12271 317 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 FCER1AP12319 257 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 CTNNA1P35221 906 aaKnown RBP8.49□□□□□ -1.05
VPS13D-211ENST00000543710 CERKLQ49MI3 558 aaPredicted RBP8.49□□□□□ -1.05
VPS13D-211ENST00000543710 MUM1L1Q5H9M0 696 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 CCDC13Q8IYE1 715 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 PROM2Q8N271 834 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 SUCLG2Q96I99 432 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 SNRKQ9NRH2 765 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 NDE1Q9NXR1 346 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 ANO9A1A5B4 782 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 PRPF3O43395 683 aaKnown RBP8.49□□□□□ -1.05
VPS13D-211ENST00000543710 S100BP04271 92 aaPredicted RBP8.49□□□□□ -1.05
VPS13D-211ENST00000543710 SERPING1P05155 500 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 FDX1P10109 184 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 SCG2P13521 617 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 STX2P32856 288 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 DNA2P51530 1060 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 LRRC63Q05C16 580 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 ADCY2Q08462 1091 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 NNTQ13423 1086 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 ZMYM1Q5SVZ6 1142 aa8.49□□□□□ -1.05
VPS13D-211ENST00000543710 SYDE1Q6ZW31 735 aaPredicted RBP8.49□□□□□ -1.05
VPS13D-211ENST00000543710 BZW1Q7L1Q6 419 aaKnown RBP8.49□□□□□ -1.05
VPS13D-211ENST00000543710 CCDC160A6NGH7 325 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 ERVV-1B6SEH8 477 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 POLR2MP0CAP2 368 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 PHKG2P15735 406 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 ZNF697Q5TEC3 545 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 CTU1Q7Z7A3 348 aaKnown RBP8.48□□□□□ -1.05
VPS13D-211ENST00000543710 VSIG1Q86XK7 387 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 CEP57Q86XR8 500 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 ARHGAP18Q8N392 663 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 TMEM199Q8N511 208 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 TTC25Q96NG3 672 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 KRT12Q99456 494 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 TIPINQ9BVW5 301 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 UBE2OQ9C0C9 1292 aaKnown RBP8.48□□□□□ -1.05
VPS13D-211ENST00000543710 EPS15L1Q9UBC2 864 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 NFE2L3Q9Y4A8 694 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 GFAPP14136 432 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 COPB1P53618 953 aaKnown RBP8.48□□□□□ -1.05
VPS13D-211ENST00000543710 ELF2Q15723 593 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 ABCB5Q2M3G0 1257 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 RGMBQ6NW40 437 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 CCDC105Q8IYK2 499 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 CCDC197Q8NCU1 140 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 NEK9Q8TD19 979 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 ACCSQ96QU6 501 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 ASIC3Q9UHC3 531 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 ZNF521Q96K83 1311 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 E9PCH4 1651 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 A0A087WUV0 522 aaPredicted RBP8.48□□□□□ -1.05
VPS13D-211ENST00000543710 PLSCR1O15162 318 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 NCAM2O15394 837 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 UBE4BO95155 1302 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 PYGBP11216 843 aa8.48□□□□□ -1.05
VPS13D-211ENST00000543710 ALAS1P13196 640 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms