RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 STK17AQ9UEE5 414 aa23.33■■□□□ 1.32
UPF3A-202ENST00000375299 KDM4FA0A1W2PPD8 638 aa23.32■■□□□ 1.32
UPF3A-202ENST00000375299 KCNMA1Q12791 1236 aa23.32■■□□□ 1.32
UPF3A-202ENST00000375299 C12orf60Q5U649 245 aa23.32■■□□□ 1.32
UPF3A-202ENST00000375299 ATP6V1G3Q96LB4 118 aa23.32■■□□□ 1.32
UPF3A-202ENST00000375299 KRT12Q99456 494 aa23.32■■□□□ 1.32
UPF3A-202ENST00000375299 MTMR7Q9Y216 660 aa23.32■■□□□ 1.32
UPF3A-202ENST00000375299 USP17L3A6NCW0 530 aa23.32■■□□□ 1.32
UPF3A-202ENST00000375299 USP17L4A6NCW7 530 aa23.32■■□□□ 1.32
UPF3A-202ENST00000375299 KLRK1P26718 216 aa23.32■■□□□ 1.32
UPF3A-202ENST00000375299 USP17L1Q7RTZ2 530 aa23.32■■□□□ 1.32
UPF3A-202ENST00000375299 LUC7LQ9NQ29 371 aaKnown RBP23.32■■□□□ 1.32
UPF3A-202ENST00000375299 HMGB1P1B2RPK0 211 aaPredicted RBP23.31■■□□□ 1.32
UPF3A-202ENST00000375299 H0YHG0 523 aa23.31■■□□□ 1.32
UPF3A-202ENST00000375299 SERPING1P05155 500 aa23.31■■□□□ 1.32
UPF3A-202ENST00000375299 DYMQ7RTS9 669 aa23.31■■□□□ 1.32
UPF3A-202ENST00000375299 DYNLL2Q96FJ2 89 aa23.31■■□□□ 1.32
UPF3A-202ENST00000375299 CABS1Q96KC9 395 aa23.31■■□□□ 1.32
UPF3A-202ENST00000375299 LZTS2Q9BRK4 669 aa23.31■■□□□ 1.32
UPF3A-202ENST00000375299 TANGO6Q9C0B7 1094 aa23.31■■□□□ 1.32
UPF3A-202ENST00000375299 NUCKS1Q9H1E3 243 aaKnown RBP23.31■■□□□ 1.32
UPF3A-202ENST00000375299 POLD4Q9HCU8 107 aa23.31■■□□□ 1.32
UPF3A-202ENST00000375299 CEP72Q9P209 647 aa23.31■■□□□ 1.32
UPF3A-202ENST00000375299 AHDC1Q5TGY3 1603 aaPredicted RBP23.31■■□□□ 1.32
UPF3A-202ENST00000375299 FTCDO95954 541 aa23.3■■□□□ 1.32
UPF3A-202ENST00000375299 NAB2Q15742 525 aa23.3■■□□□ 1.32
UPF3A-202ENST00000375299 LARP4BQ92615 738 aaKnown RBP23.3■■□□□ 1.32
UPF3A-202ENST00000375299 SYN2Q92777 582 aaPredicted RBP23.3■■□□□ 1.32
UPF3A-202ENST00000375299 INPP4AQ96PE3 977 aaPredicted RBP23.3■■□□□ 1.32
UPF3A-202ENST00000375299 PNMA5Q96PV4 448 aa23.3■■□□□ 1.32
UPF3A-202ENST00000375299 TSG101Q99816 390 aa23.3■■□□□ 1.32
UPF3A-202ENST00000375299 C6orf50Q9HD87 102 aa23.3■■□□□ 1.32
UPF3A-202ENST00000375299 NLRC4Q9NPP4 1024 aa23.3■■□□□ 1.32
UPF3A-202ENST00000375299 NRAPQ86VF7 1730 aa23.3■■□□□ 1.32
UPF3A-202ENST00000375299 SMCO2A6NFE2 343 aa23.3■■□□□ 1.32
UPF3A-202ENST00000375299 MYO1FO00160 1098 aa23.3■■□□□ 1.32
UPF3A-202ENST00000375299 MDH1P40925 334 aaKnown RBP23.3■■□□□ 1.32
UPF3A-202ENST00000375299 DNA2P51530 1060 aa23.3■■□□□ 1.32
UPF3A-202ENST00000375299 ORC2Q13416 577 aaPredicted RBP23.3■■□□□ 1.32
UPF3A-202ENST00000375299 CDC37Q16543 378 aaPredicted RBP23.3■■□□□ 1.32
UPF3A-202ENST00000375299 MEI1Q5TIA1 1274 aa23.3■■□□□ 1.32
UPF3A-202ENST00000375299 SFMBT2Q5VUG0 894 aa23.3■■□□□ 1.32
UPF3A-202ENST00000375299 NLRP14Q86W24 1093 aa23.3■■□□□ 1.32
UPF3A-202ENST00000375299 MKNK2Q9HBH9 465 aa23.3■■□□□ 1.32
UPF3A-202ENST00000375299 TSPY3P0CV98 308 aa23.29■■□□□ 1.32
UPF3A-202ENST00000375299 TSPY8P0CW00 308 aa23.29■■□□□ 1.32
UPF3A-202ENST00000375299 ERCC3P19447 782 aa23.29■■□□□ 1.32
UPF3A-202ENST00000375299 GNA11P29992 359 aa23.29■■□□□ 1.32
UPF3A-202ENST00000375299 PCDHGC5Q9Y5F6 944 aa23.29■■□□□ 1.32
UPF3A-202ENST00000375299 COL5A3P25940 1745 aaPredicted RBP23.29■■□□□ 1.32
UPF3A-202ENST00000375299 SRRM3A6NNA2 597 aaPredicted RBP23.29■■□□□ 1.32
UPF3A-202ENST00000375299 TLR2O60603 784 aa23.29■■□□□ 1.32
UPF3A-202ENST00000375299 GOLGA8HP0CJ92 632 aa23.29■■□□□ 1.32
UPF3A-202ENST00000375299 KLRC1P26715 233 aa23.29■■□□□ 1.32
UPF3A-202ENST00000375299 HOXA7P31268 230 aaPredicted RBP23.29■■□□□ 1.32
UPF3A-202ENST00000375299 HSPA9P38646 679 aaKnown RBP23.29■■□□□ 1.32
UPF3A-202ENST00000375299 TXKP42681 527 aa23.29■■□□□ 1.32
UPF3A-202ENST00000375299 GSCP56915 257 aaPredicted RBP23.29■■□□□ 1.32
UPF3A-202ENST00000375299 MYCBPAPQ8TBZ2 947 aa23.29■■□□□ 1.32
UPF3A-202ENST00000375299 TBCKQ8TEA7 893 aa23.29■■□□□ 1.32
UPF3A-202ENST00000375299 CELF1Q92879 486 aaKnown RBP23.29■■□□□ 1.32
UPF3A-202ENST00000375299 TMEM47Q9BQJ4 181 aa23.29■■□□□ 1.32
UPF3A-202ENST00000375299 SPZ1Q9BXG8 430 aa23.29■■□□□ 1.32
UPF3A-202ENST00000375299 RIC8AQ9NPQ8 531 aa23.29■■□□□ 1.32
UPF3A-202ENST00000375299 ROBO3Q96MS0 1386 aa23.29■■□□□ 1.32
UPF3A-202ENST00000375299 KLRF2D3W0D1 207 aa23.28■■□□□ 1.32
UPF3A-202ENST00000375299 KCNQ2O43526 872 aa23.28■■□□□ 1.32
UPF3A-202ENST00000375299 SETQ01105 290 aaPredicted RBP23.28■■□□□ 1.32
UPF3A-202ENST00000375299 ITGB3BPQ13352 177 aaPredicted RBP23.28■■□□□ 1.32
UPF3A-202ENST00000375299 FOXR2Q6PJQ5 311 aa23.28■■□□□ 1.32
UPF3A-202ENST00000375299 CCT8L2Q96SF2 557 aa23.28■■□□□ 1.32
UPF3A-202ENST00000375299 ZPR1O75312 459 aa23.28■■□□□ 1.32
UPF3A-202ENST00000375299 TNNC1P63316 161 aa23.28■■□□□ 1.32
UPF3A-202ENST00000375299 FAM83BQ5T0W9 1011 aa23.28■■□□□ 1.32
UPF3A-202ENST00000375299 PROM2Q8N271 834 aa23.28■■□□□ 1.32
UPF3A-202ENST00000375299 CDK5RAP3Q96JB5 506 aa23.28■■□□□ 1.32
UPF3A-202ENST00000375299 GGA2Q9UJY4 613 aa23.28■■□□□ 1.32
UPF3A-202ENST00000375299 PLAAQ9Y263 795 aa23.28■■□□□ 1.32
UPF3A-202ENST00000375299 RAD51CO43502 376 aa23.27■■□□□ 1.32
UPF3A-202ENST00000375299 NOL4O94818 638 aa23.27■■□□□ 1.32
UPF3A-202ENST00000375299 MYBP10242 640 aa23.27■■□□□ 1.32
UPF3A-202ENST00000375299 HIBADHP31937 336 aaKnown RBP23.27■■□□□ 1.32
UPF3A-202ENST00000375299 MAATS1Q7Z4T9 603 aa23.27■■□□□ 1.32
UPF3A-202ENST00000375299 CPVLQ9H3G5 476 aa23.27■■□□□ 1.32
UPF3A-202ENST00000375299 STX8Q9UNK0 236 aa23.27■■□□□ 1.32
UPF3A-202ENST00000375299 ATP6V0A2Q9Y487 856 aa23.27■■□□□ 1.32
UPF3A-202ENST00000375299 SEC24CP53992 1094 aa23.27■■□□□ 1.32
UPF3A-202ENST00000375299 HDLBPQ00341 1268 aaKnown RBP23.27■■□□□ 1.32
UPF3A-202ENST00000375299 DDR1Q08345 913 aa23.27■■□□□ 1.32
UPF3A-202ENST00000375299 PSMD2Q13200 908 aa23.27■■□□□ 1.32
UPF3A-202ENST00000375299 CEP85LQ5SZL2 805 aa23.27■■□□□ 1.32
UPF3A-202ENST00000375299 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP23.27■■□□□ 1.321e-6■■□□□ 11.4
UPF3A-202ENST00000375299 TMBIM4Q9HC24 238 aa23.27■■□□□ 1.32
UPF3A-202ENST00000375299 TFCP2L1Q9NZI6 479 aa23.27■■□□□ 1.32
UPF3A-202ENST00000375299 PACSIN2Q9UNF0 486 aaPredicted RBP23.27■■□□□ 1.32
UPF3A-202ENST00000375299 COL4A3BPQ9Y5P4 624 aa23.27■■□□□ 1.32
UPF3A-202ENST00000375299 FAM107AO95990 144 aa23.26■■□□□ 1.31
UPF3A-202ENST00000375299 FXR2P51116 673 aaKnown RBP eCLIP23.26■■□□□ 1.31
UPF3A-202ENST00000375299 EHHADHQ08426 723 aa23.26■■□□□ 1.31
UPF3A-202ENST00000375299 TRADDQ15628 312 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms