RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 FUT8Q9BYC5 575 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 PANK4Q9NVE7 773 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 KIAA1024Q9UPX6 916 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 E9PMD0 336 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 ATP1A1P05023 1023 aaKnown RBP24.19■■□□□ 1.46
SHMT1-202ENST00000352886 RHOXF2BP0C7M4 288 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 DACT2Q5SW24 774 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 MSL1Q68DK7 614 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 CCDC42Q96M95 316 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 RHOXF2Q9BQY4 288 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 MRIQ9BWK5 157 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 MMRN2Q9H8L6 949 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 RAB21Q9UL25 225 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 PLAGL2Q9UPG8 496 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 PLEKP08567 350 aaPredicted RBP24.18■■□□□ 1.46
SHMT1-202ENST00000352886 CCDC84Q86UT8 332 aaPredicted RBP24.18■■□□□ 1.46
SHMT1-202ENST00000352886 BMP2KQ9NSY1 1161 aaPredicted RBP24.18■■□□□ 1.46
SHMT1-202ENST00000352886 ECE2O60344 883 aa24.18■■□□□ 1.46
SHMT1-202ENST00000352886 USP11P51784 963 aa24.18■■□□□ 1.46
SHMT1-202ENST00000352886 ICA1Q05084 483 aa24.18■■□□□ 1.46
SHMT1-202ENST00000352886 FAM26FQ5R3K3 315 aa24.18■■□□□ 1.46
SHMT1-202ENST00000352886 SIAH1Q8IUQ4 282 aa24.18■■□□□ 1.46
SHMT1-202ENST00000352886 KCNMB3Q9NPA1 279 aa24.18■■□□□ 1.46
SHMT1-202ENST00000352886 POTEB3A0JP26 581 aa24.17■■□□□ 1.46
SHMT1-202ENST00000352886 POTECB2RU33 542 aa24.17■■□□□ 1.46
SHMT1-202ENST00000352886 HNRNPH3P31942 346 aaKnown RBP24.17■■□□□ 1.46
SHMT1-202ENST00000352886 POTEBQ6S5H4 581 aa24.17■■□□□ 1.46
SHMT1-202ENST00000352886 C2CD5Q86YS7 1000 aa24.17■■□□□ 1.46
SHMT1-202ENST00000352886 DUSP10Q9Y6W6 482 aa24.17■■□□□ 1.46
SHMT1-202ENST00000352886 MEIS2O14770 477 aa24.16■■□□□ 1.46
SHMT1-202ENST00000352886 TATDN1Q6P1N9 297 aa24.16■■□□□ 1.46
SHMT1-202ENST00000352886 NOA1Q8NC60 698 aaKnown RBP24.16■■□□□ 1.46
SHMT1-202ENST00000352886 TBC1D7Q9P0N9 293 aa24.16■■□□□ 1.46
SHMT1-202ENST00000352886 SAR1BQ9Y6B6 198 aa24.16■■□□□ 1.46
SHMT1-202ENST00000352886 ZNF263O14978 683 aa24.16■■□□□ 1.46
SHMT1-202ENST00000352886 KIF20AO95235 890 aa24.16■■□□□ 1.46
SHMT1-202ENST00000352886 GDF11O95390 407 aa24.16■■□□□ 1.46
SHMT1-202ENST00000352886 PLA2G4BP0C869 781 aa24.16■■□□□ 1.46
SHMT1-202ENST00000352886 SNAP25P60880 206 aa24.16■■□□□ 1.46
SHMT1-202ENST00000352886 FOXR2Q6PJQ5 311 aa24.16■■□□□ 1.46
SHMT1-202ENST00000352886 KRT26Q7Z3Y9 468 aa24.16■■□□□ 1.46
SHMT1-202ENST00000352886 HNRNPLLQ8WVV9 542 aaKnown RBP24.16■■□□□ 1.46
SHMT1-202ENST00000352886 UBXN6Q9BZV1 441 aa24.16■■□□□ 1.46
SHMT1-202ENST00000352886 ARHGAP20Q9P2F6 1191 aa24.16■■□□□ 1.46
SHMT1-202ENST00000352886 ZNF219Q9P2Y4 722 aaPredicted RBP24.16■■□□□ 1.46
SHMT1-202ENST00000352886 ZNF646O15015 1829 aaPredicted RBP24.16■■□□□ 1.46
SHMT1-202ENST00000352886 VAV2P52735 878 aa24.15■■□□□ 1.46
SHMT1-202ENST00000352886 FKBP1AP62942 108 aaKnown RBP24.15■■□□□ 1.46
SHMT1-202ENST00000352886 HDLBPQ00341 1268 aaKnown RBP24.15■■□□□ 1.46
SHMT1-202ENST00000352886 SPA17Q15506 151 aa24.15■■□□□ 1.46
SHMT1-202ENST00000352886 ZCWPW2Q504Y3 356 aa24.15■■□□□ 1.46
SHMT1-202ENST00000352886 TMEM179Q6ZVK1 233 aa24.15■■□□□ 1.46
SHMT1-202ENST00000352886 FGFBP2Q9BYJ0 223 aa24.15■■□□□ 1.46
SHMT1-202ENST00000352886 TANGO6Q9C0B7 1094 aa24.15■■□□□ 1.46
SHMT1-202ENST00000352886 CYP3A7-CYP3A51PA0A087WV96 503 aa24.15■■□□□ 1.46
SHMT1-202ENST00000352886 MACROD2A1Z1Q3 448 aa24.15■■□□□ 1.46
SHMT1-202ENST00000352886 F5H6K3 240 aa24.15■■□□□ 1.46
SHMT1-202ENST00000352886 CYP3A7P24462 503 aa24.15■■□□□ 1.46
SHMT1-202ENST00000352886 STAT3P40763 770 aa24.15■■□□□ 1.46
SHMT1-202ENST00000352886 FKBP3Q00688 224 aaKnown RBP24.15■■□□□ 1.46
SHMT1-202ENST00000352886 CACNB1Q02641 598 aaPredicted RBP24.15■■□□□ 1.46
SHMT1-202ENST00000352886 KLRC3Q07444 240 aa24.15■■□□□ 1.46
SHMT1-202ENST00000352886 KIF5AQ12840 1032 aa24.15■■□□□ 1.46
SHMT1-202ENST00000352886 PAPD7Q5XG87 772 aaKnown RBP24.15■■□□□ 1.46
SHMT1-202ENST00000352886 SLX4Q8IY92 1834 aa24.15■■□□□ 1.46
SHMT1-202ENST00000352886 TRAF5O00463 557 aa24.14■■□□□ 1.46
SHMT1-202ENST00000352886 SRGAP2O75044 1071 aa24.14■■□□□ 1.46
SHMT1-202ENST00000352886 AP3B2Q13367 1082 aa24.14■■□□□ 1.46
SHMT1-202ENST00000352886 SMC1AQ14683 1233 aaKnown RBP24.14■■□□□ 1.46
SHMT1-202ENST00000352886 BEND6Q5SZJ8 279 aaPredicted RBP24.14■■□□□ 1.46
SHMT1-202ENST00000352886 CCDC65Q8IXS2 484 aa24.14■■□□□ 1.46
SHMT1-202ENST00000352886 P2RX7Q99572 595 aaKnown RBP24.14■■□□□ 1.46
SHMT1-202ENST00000352886 COL4A3BPQ9Y5P4 624 aa24.14■■□□□ 1.46
SHMT1-202ENST00000352886 NPHP3-ACAD11A0A0J9YXS1 232 aa24.14■■□□□ 1.45
SHMT1-202ENST00000352886 GPBP1Q86WP2 473 aa24.14■■□□□ 1.45
SHMT1-202ENST00000352886 SLFN12Q8IYM2 578 aa24.14■■□□□ 1.45
SHMT1-202ENST00000352886 CCDC155Q8N6L0 562 aa24.14■■□□□ 1.45
SHMT1-202ENST00000352886 MBOAT7Q96N66 472 aa24.14■■□□□ 1.45
SHMT1-202ENST00000352886 PURBQ96QR8 312 aaKnown RBP24.14■■□□□ 1.45
SHMT1-202ENST00000352886 AMNQ9BXJ7 453 aa24.14■■□□□ 1.45
SHMT1-202ENST00000352886 LRRC53A6NM62 1247 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 PLSCR1O15162 318 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 POLR3GO15318 223 aaPredicted RBP24.13■■□□□ 1.45
SHMT1-202ENST00000352886 MED24O75448 989 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 APBA3O96018 575 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 ARHGAP4P98171 946 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 RAD51AP2Q09MP3 1159 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 ABCB5Q2M3G0 1257 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 USH1GQ495M9 461 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 RRAGAQ7L523 313 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 ERLIN1O75477 346 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 VSNL1P62760 191 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 IKQ13123 557 aaPredicted RBP24.13■■□□□ 1.45
SHMT1-202ENST00000352886 PRR16Q569H4 304 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 NELFCDQ8IXH7 590 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 FLAD1Q8NFF5 587 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 TSGA10Q9BZW7 698 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 SERPINA10Q9UK55 444 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 PCDHA2Q9Y5H9 948 aa24.13■■□□□ 1.45
SHMT1-202ENST00000352886 NDUFB10O96000 172 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms