RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 LRRC63Q05C16 580 aa21.5■■□□□ 1.03
COL9A3-201ENST00000343916 TMEM179Q6ZVK1 233 aa21.5■■□□□ 1.03
COL9A3-201ENST00000343916 FLAD1Q8NFF5 587 aa21.5■■□□□ 1.03
COL9A3-201ENST00000343916 LRRC27Q9C0I9 530 aa21.5■■□□□ 1.03
COL9A3-201ENST00000343916 MMRN2Q9H8L6 949 aa21.5■■□□□ 1.03
COL9A3-201ENST00000343916 SIK3Q9Y2K2 1263 aa21.5■■□□□ 1.03
COL9A3-201ENST00000343916 TBC1D8O95759 1140 aa21.5■■□□□ 1.03
COL9A3-201ENST00000343916 NDUFB10O96000 172 aa21.5■■□□□ 1.03
COL9A3-201ENST00000343916 GH2P01242 217 aa21.5■■□□□ 1.03
COL9A3-201ENST00000343916 CYLC1P35663 651 aaPredicted RBP21.5■■□□□ 1.03
COL9A3-201ENST00000343916 RRP1BQ14684 758 aaKnown RBP21.5■■□□□ 1.03
COL9A3-201ENST00000343916 MAN2A1Q16706 1144 aa21.5■■□□□ 1.03
COL9A3-201ENST00000343916 PRR16Q569H4 304 aa21.5■■□□□ 1.03
COL9A3-201ENST00000343916 KRT26Q7Z3Y9 468 aa21.5■■□□□ 1.03
COL9A3-201ENST00000343916 MYOCDQ8IZQ8 938 aa21.5■■□□□ 1.03
COL9A3-201ENST00000343916 SPICE1Q8N0Z3 855 aa21.5■■□□□ 1.03
COL9A3-201ENST00000343916 SERPINA10Q9UK55 444 aa21.5■■□□□ 1.03
COL9A3-201ENST00000343916 MYO6Q9UM54 1294 aa21.5■■□□□ 1.03
COL9A3-201ENST00000343916 MED24O75448 989 aa21.49■■□□□ 1.03
COL9A3-201ENST00000343916 KRT83P78385 493 aa21.49■■□□□ 1.03
COL9A3-201ENST00000343916 FAM26FQ5R3K3 315 aa21.49■■□□□ 1.03
COL9A3-201ENST00000343916 NELFCDQ8IXH7 590 aa21.49■■□□□ 1.03
COL9A3-201ENST00000343916 PRMT6Q96LA8 375 aaPredicted RBP21.49■■□□□ 1.03
COL9A3-201ENST00000343916 NT5C3AQ9H0P0 336 aa21.49■■□□□ 1.03
COL9A3-201ENST00000343916 ERICH4A6NGS2 130 aa21.49■■□□□ 1.03
COL9A3-201ENST00000343916 PLA2G4BP0C869 781 aa21.49■■□□□ 1.03
COL9A3-201ENST00000343916 HMGB2P26583 209 aaKnown RBP21.49■■□□□ 1.03
COL9A3-201ENST00000343916 USP11P51784 963 aa21.49■■□□□ 1.03
COL9A3-201ENST00000343916 ARHGAP4P98171 946 aa21.49■■□□□ 1.03
COL9A3-201ENST00000343916 HDLBPQ00341 1268 aaKnown RBP21.49■■□□□ 1.03
COL9A3-201ENST00000343916 PSMD2Q13200 908 aa21.49■■□□□ 1.03
COL9A3-201ENST00000343916 FIGNQ5HY92 759 aa21.49■■□□□ 1.03
COL9A3-201ENST00000343916 HYIQ5T013 277 aa21.49■■□□□ 1.03
COL9A3-201ENST00000343916 JAKMIP2Q96AA8 810 aa21.49■■□□□ 1.03
COL9A3-201ENST00000343916 KDM3AQ9Y4C1 1321 aa21.48■■□□□ 1.03
COL9A3-201ENST00000343916 A0A1W2PQJ5 194 aa21.48■■□□□ 1.03
COL9A3-201ENST00000343916 POTEFA5A3E0 1075 aa21.48■■□□□ 1.03
COL9A3-201ENST00000343916 ZNF263O14978 683 aa21.48■■□□□ 1.03
COL9A3-201ENST00000343916 ATP1A1P05023 1023 aaKnown RBP21.48■■□□□ 1.03
COL9A3-201ENST00000343916 RHOXF2BP0C7M4 288 aa21.48■■□□□ 1.03
COL9A3-201ENST00000343916 POTEIP0CG38 1075 aa21.48■■□□□ 1.03
COL9A3-201ENST00000343916 POTEGQ6S5H5 508 aa21.48■■□□□ 1.03
COL9A3-201ENST00000343916 POTEEQ6S8J3 1075 aa21.48■■□□□ 1.03
COL9A3-201ENST00000343916 GPBP1Q86WP2 473 aa21.48■■□□□ 1.03
COL9A3-201ENST00000343916 PNKPQ96T60 521 aa21.48■■□□□ 1.03
COL9A3-201ENST00000343916 RHOXF2Q9BQY4 288 aa21.48■■□□□ 1.03
COL9A3-201ENST00000343916 AMNQ9BXJ7 453 aa21.48■■□□□ 1.03
COL9A3-201ENST00000343916 TANGO6Q9C0B7 1094 aa21.48■■□□□ 1.03
COL9A3-201ENST00000343916 ARFGAP3Q9NP61 516 aa21.48■■□□□ 1.03
COL9A3-201ENST00000343916 FKBP1AP62942 108 aaKnown RBP21.48■■□□□ 1.03
COL9A3-201ENST00000343916 GLT8D2Q9H1C3 349 aa21.48■■□□□ 1.03
COL9A3-201ENST00000343916 A0A1W2PRG0 241 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 TRAF5O00463 557 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 PSMD14O00487 310 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 SRGAP2O75044 1071 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 IPO7O95373 1038 aaKnown RBP21.47■■□□□ 1.03
COL9A3-201ENST00000343916 HOXA13P31271 388 aaPredicted RBP21.47■■□□□ 1.03
COL9A3-201ENST00000343916 TUBB2AQ13885 445 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 ZCWPW2Q504Y3 356 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 STYK1Q6J9G0 422 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 CSRNP1Q96S65 589 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 TSG101Q99816 390 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 TUBB2BQ9BVA1 445 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 BMP2KQ9NSY1 1161 aaPredicted RBP21.47■■□□□ 1.03
COL9A3-201ENST00000343916 ARHGAP20Q9P2F6 1191 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 MACROD2A1Z1Q3 448 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 CTAGE15A4D2H0 777 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 EIF3CLB5ME19 914 aaKnown RBP21.47■■□□□ 1.03
COL9A3-201ENST00000343916 KRT86O43790 486 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 FGFR1OPO95684 399 aaKnown RBP21.47■■□□□ 1.03
COL9A3-201ENST00000343916 CTAGE8P0CG41 777 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 CTAGE6Q86UF2 777 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 FBXO11Q86XK2 927 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 CTAGE4Q8IX94 777 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 CCDC170Q8IYT3 715 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 NOA1Q8NC60 698 aaKnown RBP21.47■■□□□ 1.03
COL9A3-201ENST00000343916 CRYGNQ8WXF5 182 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 CCDC42Q96M95 316 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 EIF3CQ99613 913 aaKnown RBP21.47■■□□□ 1.03
COL9A3-201ENST00000343916 ZHX3Q9H4I2 956 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 PLAGL2Q9UPG8 496 aa21.47■■□□□ 1.03
COL9A3-201ENST00000343916 CYP3A7-CYP3A51PA0A087WV96 503 aa21.46■■□□□ 1.03
COL9A3-201ENST00000343916 YDJCA8MPS7 323 aa21.46■■□□□ 1.03
COL9A3-201ENST00000343916 FAM86B1E9PN63 330 aa21.46■■□□□ 1.03
COL9A3-201ENST00000343916 MEIS1O00470 390 aa21.46■■□□□ 1.03
COL9A3-201ENST00000343916 FAM86B2P0C5J1 330 aa21.46■■□□□ 1.03
COL9A3-201ENST00000343916 CYP11B2P19099 503 aa21.46■■□□□ 1.03
COL9A3-201ENST00000343916 CYP3A7P24462 503 aa21.46■■□□□ 1.03
COL9A3-201ENST00000343916 WHAMMP3Q1A5X7 153 aa21.46■■□□□ 1.03
COL9A3-201ENST00000343916 HERC4Q5GLZ8 1057 aaPredicted RBP21.46■■□□□ 1.03
COL9A3-201ENST00000343916 ETNPPLQ8TBG4 499 aa21.46■■□□□ 1.03
COL9A3-201ENST00000343916 SMCR8Q8TEV9 937 aaPredicted RBP21.46■■□□□ 1.03
COL9A3-201ENST00000343916 NAP1L4Q99733 375 aaKnown RBP21.46■■□□□ 1.03
COL9A3-201ENST00000343916 SMCHD1A6NHR9 2005 aa21.46■■□□□ 1.03
COL9A3-201ENST00000343916 PSMC6P62333 389 aa21.46■■□□□ 1.03
COL9A3-201ENST00000343916 SPIRE1Q08AE8 756 aa21.46■■□□□ 1.03
COL9A3-201ENST00000343916 SYDE2Q5VT97 1194 aa21.46■■□□□ 1.03
COL9A3-201ENST00000343916 TRAPPC11Q7Z392 1133 aa21.46■■□□□ 1.03
COL9A3-201ENST00000343916 CATSPER3Q86XQ3 398 aa21.46■■□□□ 1.03
COL9A3-201ENST00000343916 GMCL1P1Q8NEA9 526 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms