RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 PRR16Q569H4 304 aa20.38■□□□□ 0.85
SHKBP1-201ENST00000291842 MYOCDQ8IZQ8 938 aa20.38■□□□□ 0.85
SHKBP1-201ENST00000291842 SPICE1Q8N0Z3 855 aa20.38■□□□□ 0.85
SHKBP1-201ENST00000291842 LRRC27Q9C0I9 530 aa20.38■□□□□ 0.85
SHKBP1-201ENST00000291842 C10orf71Q711Q0 1435 aa20.38■□□□□ 0.85
SHKBP1-201ENST00000291842 PLA2G4BP0C869 781 aa20.38■□□□□ 0.85
SHKBP1-201ENST00000291842 LRRC63Q05C16 580 aa20.38■□□□□ 0.85
SHKBP1-201ENST00000291842 ABCB5Q2M3G0 1257 aa20.38■□□□□ 0.85
SHKBP1-201ENST00000291842 UTP14CQ5TAP6 766 aaKnown RBP20.38■□□□□ 0.85
SHKBP1-201ENST00000291842 TATDN1Q6P1N9 297 aa20.38■□□□□ 0.85
SHKBP1-201ENST00000291842 ZHX3Q9H4I2 956 aa20.38■□□□□ 0.85
SHKBP1-201ENST00000291842 MACROD2A1Z1Q3 448 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 CTAGE15A4D2H0 777 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 ZNF263O14978 683 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 MED24O75448 989 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 IPO7O95373 1038 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 CTAGE8P0CG41 777 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 FAM26FQ5R3K3 315 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 CTAGE6Q86UF2 777 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 GPBP1Q86WP2 473 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 CTAGE4Q8IX94 777 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 NOA1Q8NC60 698 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 CCDC42Q96M95 316 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 POTEFA5A3E0 1075 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 TRAF5O00463 557 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 PLSCR1O15162 318 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 NDUFB10O96000 172 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 GH2P01242 217 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 POTEIP0CG38 1075 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 PSMD2Q13200 908 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 TUBB2AQ13885 445 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 RRP1BQ14684 758 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 TERF2Q15554 542 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 WHAMMP3Q1A5X7 153 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 POTEGQ6S5H5 508 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 POTEEQ6S8J3 1075 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 ZNF771Q7L3S4 317 aaPredicted RBP20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 TSG101Q99816 390 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 TUBB2BQ9BVA1 445 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 NT5C3AQ9H0P0 336 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 KCNMB3Q9NPA1 279 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 SLX4Q8IY92 1834 aa20.37■□□□□ 0.85
SHKBP1-201ENST00000291842 A0A1W2PQJ5 194 aa20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 EIF3CLB5ME19 914 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 MEIS1O00470 390 aa20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 PSMD14O00487 310 aa20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 KRT86O43790 486 aa20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 FGFR1OPO95684 399 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 ARHGAP4P98171 946 aa20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 TMEM179Q6ZVK1 233 aa20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 SMCR8Q8TEV9 937 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 EIF3CQ99613 913 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 BMP2KQ9NSY1 1161 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 ARHGAP20Q9P2F6 1191 aa20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 HOXA13P31271 388 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 USP11P51784 963 aa20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 LONRF2Q1L5Z9 754 aa20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 HERC4Q5GLZ8 1057 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 FIGNQ5HY92 759 aa20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 RRAGAQ7L523 313 aa20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 CCDC170Q8IYT3 715 aa20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 CAPZA3Q96KX2 299 aa20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 PRMT6Q96LA8 375 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 AMNQ9BXJ7 453 aa20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 RNF216Q9NWF9 866 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-201ENST00000291842 KDM3AQ9Y4C1 1321 aa20.35■□□□□ 0.85
SHKBP1-201ENST00000291842 LRRC53A6NM62 1247 aa20.35■□□□□ 0.85
SHKBP1-201ENST00000291842 POLR3GO15318 223 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-201ENST00000291842 PSMC6P62333 389 aa20.35■□□□□ 0.85
SHKBP1-201ENST00000291842 TRAPPC11Q7Z392 1133 aa20.35■□□□□ 0.85
SHKBP1-201ENST00000291842 MRIQ9BWK5 157 aa20.35■□□□□ 0.85
SHKBP1-201ENST00000291842 SERPINA10Q9UK55 444 aa20.35■□□□□ 0.85
SHKBP1-201ENST00000291842 HYIQ5T013 277 aa20.35■□□□□ 0.85
SHKBP1-201ENST00000291842 FBXO11Q86XK2 927 aa20.35■□□□□ 0.85
SHKBP1-201ENST00000291842 FUT8Q9BYC5 575 aa20.35■□□□□ 0.85
SHKBP1-201ENST00000291842 PLAGL2Q9UPG8 496 aa20.35■□□□□ 0.85
SHKBP1-201ENST00000291842 A0A1W2PRG0 241 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 CCDC151A5D8V7 595 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 KRT18P05783 430 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 CYP11B2P19099 503 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 CCDC40Q4G0X9 1142 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 ZCWPW2Q504Y3 356 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 FLAD1Q8NFF5 587 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 GLT8D2Q9H1C3 349 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 POLD4Q9HCU8 107 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 ZCCHC17Q9NP64 241 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 FAM86B1E9PN63 330 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 FAM86B2P0C5J1 330 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 EIF4A3P38919 411 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 FKBP3Q00688 224 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 ARSHQ5FYA8 562 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 SYDE2Q5VT97 1194 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 CCDC65Q8IXS2 484 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 CYP2W1Q8TAV3 490 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 CSRNP1Q96S65 589 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 NAP1L4Q99733 375 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 SUGCTQ9HAC7 445 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 COL4A3BPQ9Y5P4 624 aa20.34■□□□□ 0.85
SHKBP1-201ENST00000291842 CYP3A7-CYP3A51PA0A087WV96 503 aa20.33■□□□□ 0.85
SHKBP1-201ENST00000291842 CYP3A7P24462 503 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms