RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 LRRC27Q9C0I9 530 aa22.3■■□□□ 1.16
VPS53-201ENST00000291074 LACRTQ9GZZ8 138 aa22.3■■□□□ 1.16
VPS53-201ENST00000291074 PLA2G4BP0C869 781 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 ARHGAP4P98171 946 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 AMPD2Q01433 879 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 PRR16Q569H4 304 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 FAM26FQ5R3K3 315 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 MYOCDQ8IZQ8 938 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 HAUS4Q9H6D7 363 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 HDAC6Q9UBN7 1215 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 KDM3AQ9Y4C1 1321 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 POTEFA5A3E0 1075 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 YDJCA8MPS7 323 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 POTEIP0CG38 1075 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 USP11P51784 963 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 NCAPH2Q6IBW4 605 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 POTEGQ6S5H5 508 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 POTEEQ6S8J3 1075 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 GPBP1Q86WP2 473 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 AMNQ9BXJ7 453 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 MMRN2Q9H8L6 949 aa22.29■■□□□ 1.16
VPS53-201ENST00000291074 A0A1W2PRG0 241 aa22.28■■□□□ 1.16
VPS53-201ENST00000291074 CYLC1P35663 651 aaPredicted RBP22.28■■□□□ 1.16
VPS53-201ENST00000291074 PLA2G4AP47712 749 aa22.28■■□□□ 1.16
VPS53-201ENST00000291074 PSMD2Q13200 908 aa22.28■■□□□ 1.16
VPS53-201ENST00000291074 FIGNQ5HY92 759 aa22.28■■□□□ 1.16
VPS53-201ENST00000291074 NELFCDQ8IXH7 590 aa22.28■■□□□ 1.16
VPS53-201ENST00000291074 JAKMIP2Q96AA8 810 aa22.28■■□□□ 1.16
VPS53-201ENST00000291074 NT5C3AQ9H0P0 336 aa22.28■■□□□ 1.16
VPS53-201ENST00000291074 GLT8D2Q9H1C3 349 aa22.28■■□□□ 1.16
VPS53-201ENST00000291074 ANKZF1Q9H8Y5 726 aa22.28■■□□□ 1.16
VPS53-201ENST00000291074 SASH3O75995 380 aa22.28■■□□□ 1.16
VPS53-201ENST00000291074 SYDE2Q5VT97 1194 aa22.28■■□□□ 1.16
VPS53-201ENST00000291074 KRT26Q7Z3Y9 468 aa22.28■■□□□ 1.16
VPS53-201ENST00000291074 FBXO11Q86XK2 927 aa22.28■■□□□ 1.16
VPS53-201ENST00000291074 CRYGNQ8WXF5 182 aa22.28■■□□□ 1.16
VPS53-201ENST00000291074 CSRNP1Q96S65 589 aa22.28■■□□□ 1.16
VPS53-201ENST00000291074 NAP1L4Q99733 375 aaKnown RBP22.28■■□□□ 1.16
VPS53-201ENST00000291074 DUSP10Q9Y6W6 482 aa22.28■■□□□ 1.16
VPS53-201ENST00000291074 CYP3A7-CYP3A51PA0A087WV96 503 aa22.27■■□□□ 1.16
VPS53-201ENST00000291074 A0A1W2PQJ5 194 aa22.27■■□□□ 1.16
VPS53-201ENST00000291074 CYP3A7P24462 503 aa22.27■■□□□ 1.16
VPS53-201ENST00000291074 HOXA13P31271 388 aaPredicted RBP22.27■■□□□ 1.16
VPS53-201ENST00000291074 ZCWPW2Q504Y3 356 aa22.27■■□□□ 1.16
VPS53-201ENST00000291074 GMCL1P1Q8NEA9 526 aa22.27■■□□□ 1.16
VPS53-201ENST00000291074 C7orf43Q8WVR3 580 aa22.27■■□□□ 1.16
VPS53-201ENST00000291074 TSG101Q99816 390 aa22.27■■□□□ 1.16
VPS53-201ENST00000291074 MYO6Q9UM54 1294 aa22.27■■□□□ 1.16
VPS53-201ENST00000291074 ZNF263O14978 683 aa22.27■■□□□ 1.16
VPS53-201ENST00000291074 TBC1D8O95759 1140 aa22.27■■□□□ 1.16
VPS53-201ENST00000291074 KRT83P78385 493 aa22.27■■□□□ 1.16
VPS53-201ENST00000291074 ETNPPLQ8TBG4 499 aa22.27■■□□□ 1.16
VPS53-201ENST00000291074 MBOAT7Q96N66 472 aa22.27■■□□□ 1.16
VPS53-201ENST00000291074 ATP1A1P05023 1023 aaKnown RBP22.26■■□□□ 1.15
VPS53-201ENST00000291074 AP3B2Q13367 1082 aa22.26■■□□□ 1.15
VPS53-201ENST00000291074 GMCL1Q96IK5 515 aa22.26■■□□□ 1.15
VPS53-201ENST00000291074 PNKPQ96T60 521 aa22.26■■□□□ 1.15
VPS53-201ENST00000291074 EIF3CLB5ME19 914 aaKnown RBP22.26■■□□□ 1.15
VPS53-201ENST00000291074 FAM86B1E9PN63 330 aa22.26■■□□□ 1.15
VPS53-201ENST00000291074 TRAF5O00463 557 aa22.26■■□□□ 1.15
VPS53-201ENST00000291074 MEIS1O00470 390 aa22.26■■□□□ 1.15
VPS53-201ENST00000291074 OPLAHO14841 1288 aa22.26■■□□□ 1.15
VPS53-201ENST00000291074 NPM3O75607 178 aaKnown RBP22.26■■□□□ 1.15
VPS53-201ENST00000291074 FGFR1OPO95684 399 aaKnown RBP22.26■■□□□ 1.15
VPS53-201ENST00000291074 FAM86B2P0C5J1 330 aa22.26■■□□□ 1.15
VPS53-201ENST00000291074 BMP3P12645 472 aa22.26■■□□□ 1.15
VPS53-201ENST00000291074 CYP11B2P19099 503 aa22.26■■□□□ 1.15
VPS53-201ENST00000291074 SPIRE1Q08AE8 756 aa22.26■■□□□ 1.15
VPS53-201ENST00000291074 RBM26Q5T8P6 1007 aaKnown RBP22.26■■□□□ 1.15
VPS53-201ENST00000291074 LENG9Q96B70 501 aa22.26■■□□□ 1.15
VPS53-201ENST00000291074 EIF3CQ99613 913 aaKnown RBP22.26■■□□□ 1.15
VPS53-201ENST00000291074 TANGO6Q9C0B7 1094 aa22.26■■□□□ 1.15
VPS53-201ENST00000291074 BMP2KQ9NSY1 1161 aaPredicted RBP22.26■■□□□ 1.15
VPS53-201ENST00000291074 ARHGAP20Q9P2F6 1191 aa22.26■■□□□ 1.15
VPS53-201ENST00000291074 ATRNL1Q5VV63 1379 aa22.26■■□□□ 1.15
VPS53-201ENST00000291074 PSMD14O00487 310 aa22.25■■□□□ 1.15
VPS53-201ENST00000291074 PPIP5K2O43314 1243 aa22.25■■□□□ 1.15
VPS53-201ENST00000291074 TUBB2AQ13885 445 aa22.25■■□□□ 1.15
VPS53-201ENST00000291074 SMCR8Q8TEV9 937 aaPredicted RBP22.25■■□□□ 1.15
VPS53-201ENST00000291074 CNKSR1Q969H4 720 aa22.25■■□□□ 1.15
VPS53-201ENST00000291074 TUBB2BQ9BVA1 445 aa22.25■■□□□ 1.15
VPS53-201ENST00000291074 ZHX3Q9H4I2 956 aa22.25■■□□□ 1.15
VPS53-201ENST00000291074 PCDHA2Q9Y5H9 948 aa22.25■■□□□ 1.15
VPS53-201ENST00000291074 TCP10L2B9ZVM9 353 aa22.25■■□□□ 1.15
VPS53-201ENST00000291074 RHOXF2BP0C7M4 288 aa22.25■■□□□ 1.15
VPS53-201ENST00000291074 ECE1P42892 770 aa22.25■■□□□ 1.15
VPS53-201ENST00000291074 PSMC6P62333 389 aa22.25■■□□□ 1.15
VPS53-201ENST00000291074 WHAMMP3Q1A5X7 153 aa22.25■■□□□ 1.15
VPS53-201ENST00000291074 HERC4Q5GLZ8 1057 aaPredicted RBP22.25■■□□□ 1.15
VPS53-201ENST00000291074 CCDC170Q8IYT3 715 aa22.25■■□□□ 1.15
VPS53-201ENST00000291074 RHOXF2Q9BQY4 288 aa22.25■■□□□ 1.15
VPS53-201ENST00000291074 CLRN2A0PK11 232 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 IPO7O95373 1038 aaKnown RBP22.24■■□□□ 1.15
VPS53-201ENST00000291074 ARSHQ5FYA8 562 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 CATSPER3Q86XQ3 398 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 NOA1Q8NC60 698 aaKnown RBP22.24■■□□□ 1.15
VPS53-201ENST00000291074 CYP2W1Q8TAV3 490 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 PLAGL2Q9UPG8 496 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 ABCB11O95342 1321 aa22.24■■□□□ 1.15
VPS53-201ENST00000291074 SPDYE3A6NKU9 549 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms