RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 BLIDQ8IZY5 108 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 ERGIC2Q96RQ1 377 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 OSBPL7Q9BZF2 842 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 MEGF6O75095 1541 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 RIC1Q4ADV7 1423 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 A0A1W2PQJ5 194 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 DNM1LO00429 736 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 CSF1RP07333 972 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 PEX19P40855 299 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 SEC23AQ15436 765 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 INF2Q27J81 1249 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 ZNF572Q7Z3I7 529 aaPredicted RBP14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 CABP7Q86V35 215 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 TAF1DQ9H5J8 278 aaPredicted RBP14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 TMBIM4Q9HC24 238 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 PLCG1P19174 1290 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 HSD17B3P37058 310 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 CRYMQ14894 314 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 SRBD1Q8N5C6 995 aaKnown RBP14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 ANKS4BQ8N8V4 417 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 ZNF512BQ96KM6 892 aaPredicted RBP14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 SELENOSQ9BQE4 189 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 GOPCQ9HD26 462 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 BCAMP50895 628 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 MAGOHP61326 146 aaKnown RBP14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 PPP2R2AP63151 447 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 MYO1EQ12965 1108 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 RAPGEF1Q13905 1077 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 KIAA0753Q2KHM9 967 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 MAGOHBQ96A72 148 aaKnown RBP14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 IQCDQ96DY2 449 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 LEMD3Q9Y2U8 911 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 SMIM23A6NLE4 172 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 EPS15P42566 896 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 AMPD3Q01432 767 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 NAALADL2Q58DX5 795 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 FAM47AQ5JRC9 791 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 MIIPQ5JXC2 388 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 CNNM4Q6P4Q7 775 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 THOC1Q96FV9 657 aaKnown RBP14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 MTA3Q9BTC8 594 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 PAGR1Q9BTK6 254 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 TRIM31Q9BZY9 425 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 MYH7P12883 1935 aa14.13□□□□□ -0.15
SFSWAP-209ENST00000540469 FGFR1OPO95684 399 aaKnown RBP14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 CDC37Q16543 378 aaPredicted RBP14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 FIGNQ5HY92 759 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 WLSQ5T9L3 541 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 CD302Q8IX05 232 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 PIK3R5Q8WYR1 880 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 TNFRSF25Q93038 417 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 CDK5RAP3Q96JB5 506 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 AP1M1Q9BXS5 423 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 NID2Q14112 1375 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 TLDC2A0PJX2 215 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 KLRC4O43908 158 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 NMT2O60551 498 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 VEGFAP15692 232 aaPredicted RBP14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 RPS6KA1Q15418 735 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 SPRED3Q2MJR0 410 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 DYMQ7RTS9 669 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 RNF10Q8N5U6 811 aaKnown RBP14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 MYH6P13533 1939 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 LMTK3Q96Q04 1460 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 IRF6O14896 467 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 NKRFO15226 690 aaKnown RBP eCLIP14.12□□□□□ -0.151e-6■□□□□ 10.8
SFSWAP-209ENST00000540469 CTNND1O60716 968 aaKnown RBP14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 MAN2A1Q16706 1144 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 SFMBT2Q5VUG0 894 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 HEATR3Q7Z4Q2 680 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 CCDC63Q8NA47 563 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 RAPGEF5Q92565 580 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 TMEM60Q9H2L4 133 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 GGA2Q9UJY4 613 aa14.12□□□□□ -0.15
SFSWAP-209ENST00000540469 PPP1R12AO14974 1030 aaPredicted RBP14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 TRAPPC3O43617 180 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 TROAPQ12815 778 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 MREGQ8N565 214 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 TBC1D5Q92609 795 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 CCDC113Q9H0I3 377 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 FBXL5Q9UKA1 691 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 SPATA31A3Q5VYP0 1347 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 CNTNAP5Q8WYK1 1306 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 TSPY2A6NKD2 308 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 MYL1P05976 194 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 SARNPP82979 210 aaKnown RBP14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 FUT2Q10981 343 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 BIRC3Q13489 604 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 NPY5RQ15761 445 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 C6orf89Q6UWU4 347 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 TBC1D1Q86TI0 1168 aaPredicted RBP14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 CALR3Q96L12 384 aaKnown RBP14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 DPH5Q9H2P9 285 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 SWAP70Q9UH65 585 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 SIPA1L3O60292 1781 aaPredicted RBP14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 ADAMTS3O15072 1205 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 KIF5BP33176 963 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 HSPA9P38646 679 aaKnown RBP14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 LETM2Q2VYF4 491 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 CCDC197Q8NCU1 140 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms