RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 SHROOM4Q9ULL8 1493 aa6.65□□□□□ -1.35
SMC4-224ENST00000494612 PDPK1O15530 556 aa6.64□□□□□ -1.35
SMC4-224ENST00000494612 SMARCA5O60264 1052 aaPredicted RBP6.64□□□□□ -1.35
SMC4-224ENST00000494612 CPZQ66K79 652 aa6.64□□□□□ -1.35
SMC4-224ENST00000494612 ADAT2Q7Z6V5 191 aaKnown RBP6.64□□□□□ -1.35
SMC4-224ENST00000494612 CARFQ8N187 725 aa6.64□□□□□ -1.35
SMC4-224ENST00000494612 ALG3Q92685 438 aa6.64□□□□□ -1.35
SMC4-224ENST00000494612 BCAS3Q9H6U6 928 aa6.64□□□□□ -1.35
SMC4-224ENST00000494612 DUSP10Q9Y6W6 482 aa6.64□□□□□ -1.35
SMC4-224ENST00000494612 EPHX1P07099 455 aa6.63□□□□□ -1.35
SMC4-224ENST00000494612 CNR2P34972 360 aa6.63□□□□□ -1.35
SMC4-224ENST00000494612 RASA3Q14644 834 aa6.63□□□□□ -1.35
SMC4-224ENST00000494612 SLC9A5Q14940 896 aa6.63□□□□□ -1.35
SMC4-224ENST00000494612 NFE2L2Q16236 605 aa6.63□□□□□ -1.35
SMC4-224ENST00000494612 SV2CQ496J9 727 aa6.63□□□□□ -1.35
SMC4-224ENST00000494612 HEATR6Q6AI08 1181 aaKnown RBP6.63□□□□□ -1.35
SMC4-224ENST00000494612 SPATC1Q76KD6 591 aa6.63□□□□□ -1.35
SMC4-224ENST00000494612 LZTR1Q8N653 840 aa6.63□□□□□ -1.35
SMC4-224ENST00000494612 NETO2Q8NC67 525 aa6.63□□□□□ -1.35
SMC4-224ENST00000494612 ADCY4Q8NFM4 1077 aa6.63□□□□□ -1.35
SMC4-224ENST00000494612 NOX5Q96PH1 765 aa6.63□□□□□ -1.35
SMC4-224ENST00000494612 SPATA6Q9NWH7 488 aaPredicted RBP6.63□□□□□ -1.35
SMC4-224ENST00000494612 C1QTNF3-AMACRE9PGA6 284 aa6.62□□□□□ -1.35
SMC4-224ENST00000494612 VAMP4O75379 141 aa6.62□□□□□ -1.35
SMC4-224ENST00000494612 ITGB3P05106 788 aa6.62□□□□□ -1.35
SMC4-224ENST00000494612 GDF5P43026 501 aa6.62□□□□□ -1.35
SMC4-224ENST00000494612 IFRD2Q12894 506 aaPredicted RBP6.62□□□□□ -1.35
SMC4-224ENST00000494612 NCAPHQ15003 741 aa6.62□□□□□ -1.35
SMC4-224ENST00000494612 MTERF2Q49AM1 385 aa6.62□□□□□ -1.35
SMC4-224ENST00000494612 ARHGEF39Q8N4T4 335 aa6.62□□□□□ -1.35
SMC4-224ENST00000494612 DDX1Q92499 740 aaKnown RBP6.62□□□□□ -1.35
SMC4-224ENST00000494612 MKL1Q969V6 931 aa6.62□□□□□ -1.35
SMC4-224ENST00000494612 PEX11GQ96HA9 241 aa6.62□□□□□ -1.35
SMC4-224ENST00000494612 CCDC113Q9H0I3 377 aa6.62□□□□□ -1.35
SMC4-224ENST00000494612 MSRB2Q9Y3D2 182 aa6.62□□□□□ -1.35
SMC4-224ENST00000494612 RWDD3Q9Y3V2 267 aa6.62□□□□□ -1.35
SMC4-224ENST00000494612 STXBP3O00186 592 aa6.61□□□□□ -1.35
SMC4-224ENST00000494612 SUSD5O60279 629 aa6.61□□□□□ -1.35
SMC4-224ENST00000494612 CACNB2Q08289 660 aaPredicted RBP6.61□□□□□ -1.35
SMC4-224ENST00000494612 CABP7Q86V35 215 aa6.61□□□□□ -1.35
SMC4-224ENST00000494612 LINC00482Q8N8I6 264 aa6.61□□□□□ -1.35
SMC4-224ENST00000494612 SMARCC2Q8TAQ2 1214 aa6.61□□□□□ -1.35
SMC4-224ENST00000494612 RCC1LQ96I51 464 aaKnown RBP6.61□□□□□ -1.35
SMC4-224ENST00000494612 RBM15Q96T37 977 aaKnown RBP eCLIP6.61□□□□□ -1.35
SMC4-224ENST00000494612 APBA2Q99767 749 aa6.61□□□□□ -1.35
SMC4-224ENST00000494612 MENTQ9BUN1 341 aa6.61□□□□□ -1.35
SMC4-224ENST00000494612 LRP2BPQ9P2M1 347 aa6.61□□□□□ -1.35
SMC4-224ENST00000494612 SUGT1Q9Y2Z0 365 aa6.61□□□□□ -1.35
SMC4-224ENST00000494612 C2orf71A6NGG8 1288 aa6.6□□□□□ -1.35
SMC4-224ENST00000494612 DIAPH1O60610 1272 aaKnown RBP6.6□□□□□ -1.35
SMC4-224ENST00000494612 ZBTB7AO95365 584 aa6.6□□□□□ -1.35
SMC4-224ENST00000494612 GJA9P57773 515 aa6.6□□□□□ -1.35
SMC4-224ENST00000494612 EEPD1Q7L9B9 569 aa6.6□□□□□ -1.35
SMC4-224ENST00000494612 NOP9Q86U38 636 aaKnown RBP6.6□□□□□ -1.35
SMC4-224ENST00000494612 ZNF761Q86XN6 746 aaPredicted RBP6.6□□□□□ -1.35
SMC4-224ENST00000494612 CPNE8Q86YQ8 564 aa6.6□□□□□ -1.35
SMC4-224ENST00000494612 LILRB2Q8N423 598 aa6.6□□□□□ -1.35
SMC4-224ENST00000494612 ZNF513Q8N8E2 541 aaPredicted RBP6.6□□□□□ -1.35
SMC4-224ENST00000494612 MRIQ9BWK5 157 aa6.6□□□□□ -1.35
SMC4-224ENST00000494612 KANSL2Q9H9L4 492 aa6.6□□□□□ -1.35
SMC4-224ENST00000494612 APEX2Q9UBZ4 518 aa6.6□□□□□ -1.35
SMC4-224ENST00000494612 CGGBP1Q9UFW8 167 aaPredicted RBP6.6□□□□□ -1.35
SMC4-224ENST00000494612 BACE2Q9Y5Z0 518 aa6.6□□□□□ -1.35
SMC4-224ENST00000494612 MRPL42Q9Y6G3 142 aaKnown RBP6.6□□□□□ -1.35
SMC4-224ENST00000494612 KDM2BQ8NHM5 1336 aa6.59□□□□□ -1.35
SMC4-224ENST00000494612 C6P13671 934 aa6.59□□□□□ -1.35
SMC4-224ENST00000494612 SARSP49591 514 aaKnown RBP6.59□□□□□ -1.35
SMC4-224ENST00000494612 SEPHS1P49903 392 aa6.59□□□□□ -1.35
SMC4-224ENST00000494612 SSRP1Q08945 709 aaKnown RBP6.59□□□□□ -1.35
SMC4-224ENST00000494612 GRB10Q13322 594 aa6.59□□□□□ -1.35
SMC4-224ENST00000494612 RASGRF1Q13972 1273 aa6.59□□□□□ -1.35
SMC4-224ENST00000494612 DPY19L1Q2PZI1 675 aa6.59□□□□□ -1.35
SMC4-224ENST00000494612 JAZF1Q86VZ6 243 aa6.59□□□□□ -1.35
SMC4-224ENST00000494612 LOXL4Q96JB6 756 aa6.59□□□□□ -1.35
SMC4-224ENST00000494612 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.59□□□□□ -1.35
SMC4-224ENST00000494612 GULP1Q9UBP9 304 aa6.59□□□□□ -1.35
SMC4-224ENST00000494612 NUDT5Q9UKK9 219 aa6.59□□□□□ -1.35
SMC4-224ENST00000494612 ANKRD34BA5PLL1 514 aa6.58□□□□□ -1.36
SMC4-224ENST00000494612 PPM1BO75688 479 aa6.58□□□□□ -1.36
SMC4-224ENST00000494612 SLC10A6Q3KNW5 377 aa6.58□□□□□ -1.36
SMC4-224ENST00000494612 SCAND2PQ9GZW5 306 aaPredicted RBP6.58□□□□□ -1.36
SMC4-224ENST00000494612 GBP3Q9H0R5 595 aa6.58□□□□□ -1.36
SMC4-224ENST00000494612 NTMQ9P121 344 aa6.58□□□□□ -1.36
SMC4-224ENST00000494612 TLDC2A0PJX2 215 aa6.57□□□□□ -1.36
SMC4-224ENST00000494612 C7orf72A4D263 438 aa6.57□□□□□ -1.36
SMC4-224ENST00000494612 ZNF20P17024 532 aa6.57□□□□□ -1.36
SMC4-224ENST00000494612 PAMP19021 973 aa6.57□□□□□ -1.36
SMC4-224ENST00000494612 AMPD2Q01433 879 aa6.57□□□□□ -1.36
SMC4-224ENST00000494612 WWC2Q6AWC2 1192 aa6.57□□□□□ -1.36
SMC4-224ENST00000494612 TTC9BQ8N6N2 239 aa6.57□□□□□ -1.36
SMC4-224ENST00000494612 PLEKHO2Q8TD55 490 aa6.57□□□□□ -1.36
SMC4-224ENST00000494612 RNPC3Q96LT9 517 aaKnown RBP6.57□□□□□ -1.36
SMC4-224ENST00000494612 C8orf49Q96NF6 230 aa6.57□□□□□ -1.36
SMC4-224ENST00000494612 SAMD11Q96NU1 681 aa6.57□□□□□ -1.36
SMC4-224ENST00000494612 C1QTNF3Q9BXJ4 246 aa6.57□□□□□ -1.36
SMC4-224ENST00000494612 SLITRK6Q9H5Y7 841 aa6.57□□□□□ -1.36
SMC4-224ENST00000494612 TMA7Q9Y2S6 64 aaKnown RBP6.57□□□□□ -1.36
SMC4-224ENST00000494612 TRBV23OR9-2A0A075B6M9 112 aa6.56□□□□□ -1.36
SMC4-224ENST00000494612 NPHP3-ACAD11A0A0J9YXS1 232 aa6.56□□□□□ -1.36
SMC4-224ENST00000494612 NTRK1P04629 796 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms