RNA–Protein interactions for RNA: ENST00000475993.1

ABCF1-205, Transcript of ATP binding cassette subfamily F member 1, human

TSL 1 (best)

Gene ABCF1, Length 2,860 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCF1-205	ENST00000475993	PPP2R2A	P63151	447 aa		11.63	□□□□□ -0.55
ABCF1-205	ENST00000475993	RASA3	Q14644	834 aa		11.63	□□□□□ -0.55
ABCF1-205	ENST00000475993	EIF1AD	Q8N9N8	165 aa	Known RBP	11.63	□□□□□ -0.55
ABCF1-205	ENST00000475993	MKL1	Q969V6	931 aa		11.63	□□□□□ -0.55
ABCF1-205	ENST00000475993	IQCG	Q9H095	443 aa	Known RBP	11.63	□□□□□ -0.55
ABCF1-205	ENST00000475993	RANBP17	Q9H2T7	1088 aa	Known RBP	11.63	□□□□□ -0.55
ABCF1-205	ENST00000475993	EXOC1	Q9NV70	894 aa		11.63	□□□□□ -0.55
ABCF1-205	ENST00000475993	CNOT8	Q9UFF9	292 aa	Known RBP	11.63	□□□□□ -0.55
ABCF1-205	ENST00000475993	C5	P01031	1676 aa		11.63	□□□□□ -0.55
ABCF1-205	ENST00000475993	SLIT3	O75094	1523 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993		B4DLN1	442 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	HNRNPH3	P31942	346 aa	Known RBP	11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	PMS1	P54277	932 aa	Known RBP	11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	LRRC24	Q50LG9	513 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	FIGN	Q5HY92	759 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	ADSSL1	Q8N142	457 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	MS4A14	Q96JA4	679 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	KCNMB3	Q9NPA1	279 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	NOP53	Q9NZM5	478 aa	Known RBP	11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	MAPK8IP1	Q9UQF2	711 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	L3MBTL1	Q9Y468	752 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	LRP6	O75581	1613 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	FAM205C	A6NFA0	338 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	EIF4E1B	A6NMX2	242 aa	Known RBP	11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	EYA2	O00167	538 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	BACH1	O14867	736 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	BMP15	O95972	392 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	RPN1	P04843	607 aa	Known RBP	11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	PLEK	P08567	350 aa	Predicted RBP	11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	LINGO3	P0C6S8	592 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	HSD17B3	P37058	310 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	KLK7	P49862	253 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	ZNF844	Q08AG5	666 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	ZNF268	Q14587	947 aa	Predicted RBP	11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	AGBL2	Q5U5Z8	902 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	CCDC63	Q8NA47	563 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	SLC5A4	Q9NY91	659 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	TSKS	Q9UJT2	592 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	MYH7	P12883	1935 aa		11.62	□□□□□ -0.55
ABCF1-205	ENST00000475993	PHF20L1	A8MW92	1017 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	MYB	P10242	640 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	FER	P16591	822 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	GCLC	P48506	637 aa	Predicted RBP	11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	MKRN4P	Q13434	485 aa	Predicted RBP	11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	BLMH	Q13867	455 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	TRADD	Q15628	312 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	UAP1	Q16222	522 aa	Predicted RBP	11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	KLHDC7A	Q5VTJ3	777 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	RUFY4	Q6ZNE9	571 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	CPLX4	Q7Z7G2	160 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	SYCP3	Q8IZU3	236 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	AGAP11	Q8TF27	550 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	CNKSR1	Q969H4	720 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	RBM33	Q96EV2	1170 aa	Known RBP	11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	DNAAF2	Q9NVR5	837 aa	Known RBP	11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	SALL4	Q9UJQ4	1053 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	PLAGL2	Q9UPG8	496 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	EID1	Q9Y6B2	187 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	ARHGAP23	Q9P227	1491 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	RGPD2	P0DJD1	1756 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	CFAP73	A6NFT4	308 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	PJA2	O43164	708 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	EARS2	Q5JPH6	523 aa	Known RBP	11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	GORASP1	Q9BQQ3	440 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	ARHGAP20	Q9P2F6	1191 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993		A6NHS1	94 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	ATP5J2-PTCD1	G3V325	749 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	WNT7A	O00755	349 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	PTCD1	O75127	700 aa	Known RBP	11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	CIAO1	O76071	339 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	ECHS1	P30084	290 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	SCARF1	Q14162	830 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	RTN1	Q16799	776 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	PYM1	Q9BRP8	204 aa	Known RBP	11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	TUBGCP2	Q9BSJ2	902 aa		11.61	□□□□□ -0.55
ABCF1-205	ENST00000475993	ARFGEF2	Q9Y6D5	1785 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	GRID2IP	A4D2P6	1211 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	CLTA	P09496	248 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	ZAP70	P43403	619 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	KIF11	P52732	1056 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	CCDC15	Q0P6D6	951 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	ABTB2	Q8N961	1025 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	CCDC197	Q8NCU1	140 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	OR2W6P	Q8NHA6	318 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	SHISA4	Q96DD7	197 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	CHMP6	Q96FZ7	201 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	KRT12	Q99456	494 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	ISCU	Q9H1K1	167 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	PANK4	Q9NVE7	773 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	MAGEC2	Q9UBF1	373 aa	Predicted RBP	11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	SWAP70	Q9UH65	585 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	ABCC12	Q96J65	1359 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	ATRN	O75882	1429 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	PNMA8A	Q86V59	439 aa	Predicted RBP	11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	MTMR8	Q96EF0	704 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	ERGIC2	Q96RQ1	377 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	ZSWIM5	Q9P217	1185 aa		11.6	□□□□□ -0.55
ABCF1-205	ENST00000475993	NAT1	P18440	290 aa		11.59	□□□□□ -0.55
ABCF1-205	ENST00000475993	ATP2C1	P98194	919 aa	Predicted RBP	11.59	□□□□□ -0.55

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