RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 C1orf167Q5SNV9 1468 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 ANKRD34BA5PLL1 514 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 NOTOA8MTQ0 251 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 BIN1O00499 593 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 PPM1BO75688 479 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 KCNH1O95259 989 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 GSNP06396 782 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 RAC2P15153 192 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 ZNF513Q8N8E2 541 aaPredicted RBP3.45□□□□□ -1.86
VPS13A-208ENST00000423463 NAT16Q8N8M0 369 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 ABHD4Q8TB40 342 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 SREK1Q8WXA9 508 aaKnown RBP3.45□□□□□ -1.86
VPS13A-208ENST00000423463 LRRC59Q96AG4 307 aaKnown RBP3.45□□□□□ -1.86
VPS13A-208ENST00000423463 ORAI2Q96SN7 254 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 PLCD4Q9BRC7 762 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 ZNF281Q9Y2X9 895 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 RNF114Q9Y508 228 aa3.45□□□□□ -1.86
VPS13A-208ENST00000423463 ROCK2O75116 1388 aaKnown RBP3.44□□□□□ -1.86
VPS13A-208ENST00000423463 EIF3AQ14152 1382 aaKnown RBP3.44□□□□□ -1.86
VPS13A-208ENST00000423463 GPRASP1Q5JY77 1395 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.44□□□□□ -1.86
VPS13A-208ENST00000423463 CENPJQ9HC77 1338 aaPredicted RBP3.44□□□□□ -1.86
VPS13A-208ENST00000423463 KLF4O43474 513 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 STK10O94804 968 aaKnown RBP3.44□□□□□ -1.86
VPS13A-208ENST00000423463 HPXP02790 462 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 ATP2B1P20020 1258 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 FXNQ16595 210 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 DDR2Q16832 855 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 SV2CQ496J9 727 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 MPZL3Q6UWV2 235 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 FCRL2Q96LA5 508 aaPredicted RBP3.44□□□□□ -1.86
VPS13A-208ENST00000423463 CARD11Q9BXL7 1154 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 KIAA1210Q9ULL0 1709 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 SUSD5O60279 629 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 JUNBP17275 347 aaPredicted RBP3.44□□□□□ -1.86
VPS13A-208ENST00000423463 AFMP43652 599 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 RTP1P59025 263 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 DUSP4Q13115 394 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 SF3A1Q15459 793 aaKnown RBP3.44□□□□□ -1.86
VPS13A-208ENST00000423463 DIRC2Q96SL1 478 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 CDK19Q9BWU1 502 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 TRIM55Q9BYV6 548 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 PRR13Q9NZ81 148 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 AKT3Q9Y243 479 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 NPHP3Q7Z494 1330 aa3.44□□□□□ -1.86
VPS13A-208ENST00000423463 IQCJ-SCHIP1C9J366 451 aaPredicted RBP3.43□□□□□ -1.86
VPS13A-208ENST00000423463 POU4F1Q01851 419 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 NCAPHQ15003 741 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 SF1Q15637 639 aaKnown RBP3.43□□□□□ -1.86
VPS13A-208ENST00000423463 OXR1Q8N573 874 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 TMEM52Q8NDY8 209 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 BTN2A2Q8WVV5 523 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 DNAJC2Q99543 621 aaKnown RBP3.43□□□□□ -1.86
VPS13A-208ENST00000423463 HIRIP3Q9BW71 556 aaPredicted RBP3.43□□□□□ -1.86
VPS13A-208ENST00000423463 GPRC5CQ9NQ84 441 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 LRP2BPQ9P2M1 347 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 SF3B6Q9Y3B4 125 aaKnown RBP3.43□□□□□ -1.86
VPS13A-208ENST00000423463 KNDC1Q76NI1 1749 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 ANKARQ7Z5J8 1434 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 JCADQ9P266 1359 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 CDC42BPGQ6DT37 1551 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 EVC2Q86UK5 1308 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 FITM1A5D6W6 292 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 LRRC10BA6NIK2 292 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 IGSF3O75054 1194 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 ITGAVP06756 1048 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 GLI1P08151 1106 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 GRIA2P42262 883 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 AMPD2Q01433 879 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 RAB33AQ14088 237 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 SLC14A2Q15849 920 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 PRSS53Q2L4Q9 553 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 SLC10A6Q3KNW5 377 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 PRR23BQ6ZRT6 265 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 KRT28Q7Z3Y7 464 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 ARHGEF39Q8N4T4 335 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 ANKS4BQ8N8V4 417 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 BVESQ8NE79 360 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 ASIC4Q96FT7 647 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 IMPACTQ9P2X3 320 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 SPATA31A6Q5VVP1 1343 aa3.43□□□□□ -1.86
VPS13A-208ENST00000423463 FADS2P1A8MWK0 482 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 FGF10O15520 208 aaPredicted RBP3.42□□□□□ -1.86
VPS13A-208ENST00000423463 TACR1P25103 407 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 SCRN1Q12765 414 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 LAPTM5Q13571 262 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 MLANAQ16655 118 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 TMEM67Q5HYA8 995 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 OGFOD2Q6N063 350 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 ZNF227Q86WZ6 799 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 CKAP2LQ8IYA6 745 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 DRC1Q96MC2 740 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 PUS7Q96PZ0 661 aaKnown RBP3.42□□□□□ -1.86
VPS13A-208ENST00000423463 JMJD8Q96S16 334 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 ROBO1Q9Y6N7 1651 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 RALGAPBQ86X10 1494 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 AHDC1Q5TGY3 1603 aaPredicted RBP3.42□□□□□ -1.86
VPS13A-208ENST00000423463 AURKAO14965 403 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 CHRNEQ04844 493 aa3.42□□□□□ -1.86
VPS13A-208ENST00000423463 HSF5Q4G112 596 aaPredicted RBP3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms