RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 STIM2Q9P246 746 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 ANKFY1Q9P2R3 1169 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 ZNF70Q9UC06 446 aaPredicted RBP17.12■□□□□ 0.33
PHRF1-203ENST00000416188 PARP2Q9UGN5 583 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 MYO3AQ8NEV4 1616 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 PNMA6FA0A0J9YX94 578 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 NLRP7Q8WX94 980 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 OSBPL3Q9H4L5 887 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 RNF146Q9NTX7 359 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 USP17L15C9J2P7 530 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 USP17L13C9JLJ4 530 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 USP17L11C9JVI0 530 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 USP17L18D6R9N7 530 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 USP17L22D6RA61 530 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 USP17L17D6RBQ6 530 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 USP17L19D6RCP7 530 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 USP17L20D6RJB6 530 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 HGSO14964 777 aaPredicted RBP17.12■□□□□ 0.33
PHRF1-203ENST00000416188 ABL1P00519 1130 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 ECE1P42892 770 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 USP17L24Q0WX57 530 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 SCRN1Q12765 414 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 SPATA24Q86W54 205 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 MMP19Q99542 508 aa17.12■□□□□ 0.33
PHRF1-203ENST00000416188 GOLGA6BA6NDN3 693 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 CCDC160A6NGH7 325 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 GAS8O95995 478 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 NT5C2P49902 561 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 MXD3Q9BW11 206 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 LSM14BQ9BX40 385 aaKnown RBP17.11■□□□□ 0.33
PHRF1-203ENST00000416188 RIPOR2Q9Y4F9 1068 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 XRCC5P13010 732 aaKnown RBP17.11■□□□□ 0.33
PHRF1-203ENST00000416188 GTF2A1P52655 376 aaPredicted RBP17.11■□□□□ 0.33
PHRF1-203ENST00000416188 MORC3Q14149 939 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 STXBP2Q15833 593 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 KIAA1841Q6NSI8 718 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 PDXDC2PQ6P474 469 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 FBXO18Q8NFZ0 1043 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 CEP170P1Q96L14 293 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 MMS19Q96T76 1030 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 MED10Q9BTT4 135 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 FANCLQ9NW38 375 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 DAGLAQ9Y4D2 1042 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 EXOC8Q8IYI6 725 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 VEGFAP15692 232 aaPredicted RBP17.11■□□□□ 0.33
PHRF1-203ENST00000416188 NDUFA8P51970 172 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 PPP2R5DQ14738 602 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 KRBA2Q6ZNG9 492 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 SMC1BQ8NDV3 1235 aa17.11■□□□□ 0.33
PHRF1-203ENST00000416188 NUCKS1Q9H1E3 243 aaKnown RBP17.11■□□□□ 0.33
PHRF1-203ENST00000416188 FAM49AQ9H0Q0 323 aaPredicted RBP17.1■□□□□ 0.33
PHRF1-203ENST00000416188 COL4A3BPQ9Y5P4 624 aa17.1■□□□□ 0.33
PHRF1-203ENST00000416188 CLIC4Q9Y696 253 aa17.1■□□□□ 0.33
PHRF1-203ENST00000416188 ABCB4P21439 1286 aa17.1■□□□□ 0.33
PHRF1-203ENST00000416188 PAK2Q13177 524 aa17.1■□□□□ 0.33
PHRF1-203ENST00000416188 UBE2SQ16763 222 aa17.1■□□□□ 0.33
PHRF1-203ENST00000416188 SYCE1Q8N0S2 351 aa17.1■□□□□ 0.33
PHRF1-203ENST00000416188 U2AF1L4Q8WU68 220 aaKnown RBP17.1■□□□□ 0.33
PHRF1-203ENST00000416188 EEF2KMTQ96G04 330 aa17.1■□□□□ 0.33
PHRF1-203ENST00000416188 RMDN3Q96TC7 470 aa17.1■□□□□ 0.33
PHRF1-203ENST00000416188 PARK7Q99497 189 aaKnown RBP17.1■□□□□ 0.33
PHRF1-203ENST00000416188 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.1■□□□□ 0.332e-6■■■■■ 34.4
PHRF1-203ENST00000416188 GCFC2P16383 781 aaKnown RBP17.1■□□□□ 0.33
PHRF1-203ENST00000416188 MARK3P27448 753 aa17.1■□□□□ 0.33
PHRF1-203ENST00000416188 STAT1P42224 750 aa17.1■□□□□ 0.33
PHRF1-203ENST00000416188 PTGDRQ13258 359 aa17.1■□□□□ 0.33
PHRF1-203ENST00000416188 GPT2Q8TD30 523 aa17.1■□□□□ 0.33
PHRF1-203ENST00000416188 TBCKQ8TEA7 893 aa17.1■□□□□ 0.33
PHRF1-203ENST00000416188 TMEM191BP0C7N4 346 aa17.1■□□□□ 0.33
PHRF1-203ENST00000416188 YWHAEP62258 255 aaKnown RBP17.1■□□□□ 0.33
PHRF1-203ENST00000416188 GEN1Q17RS7 908 aa17.1■□□□□ 0.33
PHRF1-203ENST00000416188 RBM46Q8TBY0 533 aaKnown RBP17.1■□□□□ 0.33
PHRF1-203ENST00000416188 SCAF8Q9UPN6 1271 aaKnown RBP17.1■□□□□ 0.33
PHRF1-203ENST00000416188 XPOTO43592 962 aaKnown RBP17.09■□□□□ 0.33
PHRF1-203ENST00000416188 PSAPP07602 524 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 STAT3P40763 770 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 PRPF38AQ8NAV1 312 aaKnown RBP17.09■□□□□ 0.33
PHRF1-203ENST00000416188 KIAA1024Q9UPX6 916 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 SAR1BQ9Y6B6 198 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 CEP128Q6ZU80 1094 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 AGBL3Q8NEM8 1001 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 CCDC51Q96ER9 411 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 PPP1R16BQ96T49 567 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 RPAP3Q9H6T3 665 aaPredicted RBP17.09■□□□□ 0.33
PHRF1-203ENST00000416188 EPHX2P34913 555 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 SREBF2Q12772 1141 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 MTMR2Q13614 643 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 MTERF2Q49AM1 385 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 RCSD1Q6JBY9 416 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 RUFY4Q6ZNE9 571 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 ODF2LQ9ULJ1 636 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 CD2APQ9Y5K6 639 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 LRRC7Q96NW7 1537 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 ZBBXA8MT70 800 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 GNA14O95837 355 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 ARMCX3Q9UH62 379 aaPredicted RBP17.09■□□□□ 0.33
PHRF1-203ENST00000416188 TSKSQ9UJT2 592 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 ANAPC4Q9UJX5 808 aa17.09■□□□□ 0.33
PHRF1-203ENST00000416188 RGS12O14924 1447 aa17.08■□□□□ 0.33
PHRF1-203ENST00000416188 F5H6K3 240 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms