RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 BRMS1Q9HCU9 246 aa18.77■□□□□ 0.6
PDLIM1-201ENST00000329399 RCOR1Q9UKL0 485 aa18.77■□□□□ 0.6
PDLIM1-201ENST00000329399 MYADML2A6NDP7 307 aa18.77■□□□□ 0.59
PDLIM1-201ENST00000329399 LETM1O95202 739 aaPredicted RBP18.77■□□□□ 0.59
PDLIM1-201ENST00000329399 MMP1P03956 469 aa18.77■□□□□ 0.59
PDLIM1-201ENST00000329399 HOXA13P31271 388 aaPredicted RBP18.77■□□□□ 0.59
PDLIM1-201ENST00000329399 LRRC41Q15345 812 aa18.77■□□□□ 0.59
PDLIM1-201ENST00000329399 ANKLE1Q8NAG6 615 aa18.77■□□□□ 0.59
PDLIM1-201ENST00000329399 ABHD16BQ9H3Z7 469 aa18.77■□□□□ 0.59
PDLIM1-201ENST00000329399 RTEL1Q9NZ71 1219 aa18.77■□□□□ 0.59
PDLIM1-201ENST00000329399 PNMA2Q9UL42 364 aa18.77■□□□□ 0.59
PDLIM1-201ENST00000329399 MRPL11Q9Y3B7 192 aaKnown RBP18.77■□□□□ 0.59
PDLIM1-201ENST00000329399 MYH15Q9Y2K3 1946 aa18.76■□□□□ 0.59
PDLIM1-201ENST00000329399 GOLGA6L4A6NEF3 574 aa18.76■□□□□ 0.59
PDLIM1-201ENST00000329399 ASB14A6NK59 587 aa18.76■□□□□ 0.59
PDLIM1-201ENST00000329399 FIBPO43427 364 aa18.76■□□□□ 0.59
PDLIM1-201ENST00000329399 MSCO60682 206 aa18.76■□□□□ 0.59
PDLIM1-201ENST00000329399 YEATS4O95619 227 aa18.76■□□□□ 0.59
PDLIM1-201ENST00000329399 CFBP00751 764 aa18.76■□□□□ 0.59
PDLIM1-201ENST00000329399 MYCNP04198 464 aaPredicted RBP18.76■□□□□ 0.59
PDLIM1-201ENST00000329399 ADCYAP1R1P41586 468 aa18.76■□□□□ 0.59
PDLIM1-201ENST00000329399 GALNT17Q6IS24 598 aa18.76■□□□□ 0.59
PDLIM1-201ENST00000329399 NECAB2Q7Z6G3 386 aa18.76■□□□□ 0.59
PDLIM1-201ENST00000329399 POLR3EQ9NVU0 708 aa18.76■□□□□ 0.59
PDLIM1-201ENST00000329399 FAM184BQ9ULE4 1060 aa18.76■□□□□ 0.59
PDLIM1-201ENST00000329399 FRMPD3Q5JV73 1810 aa18.76■□□□□ 0.59
PDLIM1-201ENST00000329399 LAMA3Q16787 3333 aa18.75■□□□□ 0.59
PDLIM1-201ENST00000329399 hCG_1984214I3L0E3 225 aa18.75■□□□□ 0.59
PDLIM1-201ENST00000329399 AKR1A1P14550 325 aa18.75■□□□□ 0.59
PDLIM1-201ENST00000329399 EDNRBP24530 442 aa18.75■□□□□ 0.59
PDLIM1-201ENST00000329399 HSD17B4P51659 736 aa18.75■□□□□ 0.59
PDLIM1-201ENST00000329399 PFKFB3Q16875 520 aaPredicted RBP18.75■□□□□ 0.59
PDLIM1-201ENST00000329399 ZNF713Q8N859 430 aaPredicted RBP18.75■□□□□ 0.59
PDLIM1-201ENST00000329399 LEO1Q8WVC0 666 aaPredicted RBP18.75■□□□□ 0.59
PDLIM1-201ENST00000329399 C11orf49Q9H6J7 331 aa18.75■□□□□ 0.59
PDLIM1-201ENST00000329399 XPNPEP3Q9NQH7 507 aa18.75■□□□□ 0.59
PDLIM1-201ENST00000329399 V9GY48 417 aaPredicted RBP18.75■□□□□ 0.59
PDLIM1-201ENST00000329399 CNTNAP5Q8WYK1 1306 aa18.75■□□□□ 0.59
PDLIM1-201ENST00000329399 LAMA2P24043 3122 aaKnown RBP18.74■□□□□ 0.59
PDLIM1-201ENST00000329399 CTAGE5O15320 804 aa18.74■□□□□ 0.59
PDLIM1-201ENST00000329399 PPFIA3O75145 1194 aa18.74■□□□□ 0.59
PDLIM1-201ENST00000329399 ADAMTS4O75173 837 aa18.74■□□□□ 0.59
PDLIM1-201ENST00000329399 RARBP10826 455 aa18.74■□□□□ 0.59
PDLIM1-201ENST00000329399 SCG2P13521 617 aa18.74■□□□□ 0.59
PDLIM1-201ENST00000329399 SMPD1P17405 629 aa18.74■□□□□ 0.59
PDLIM1-201ENST00000329399 FOXD4L6Q3SYB3 417 aaPredicted RBP18.74■□□□□ 0.59
PDLIM1-201ENST00000329399 MYSM1Q5VVJ2 828 aa18.74■□□□□ 0.59
PDLIM1-201ENST00000329399 FOXD4L3Q6VB84 417 aaPredicted RBP18.74■□□□□ 0.59
PDLIM1-201ENST00000329399 GPT2Q8TD30 523 aa18.74■□□□□ 0.59
PDLIM1-201ENST00000329399 KCNG4Q8TDN1 519 aa18.74■□□□□ 0.59
PDLIM1-201ENST00000329399 DPF3Q92784 378 aa18.74■□□□□ 0.59
PDLIM1-201ENST00000329399 RRP36Q96EU6 259 aaKnown RBP18.74■□□□□ 0.59
PDLIM1-201ENST00000329399 SENP6Q9GZR1 1112 aaPredicted RBP18.74■□□□□ 0.59
PDLIM1-201ENST00000329399 SYNRGQ9UMZ2 1314 aa18.73■□□□□ 0.59
PDLIM1-201ENST00000329399 GUCY1B3Q02153 619 aa18.73■□□□□ 0.59
PDLIM1-201ENST00000329399 GHRHRQ02643 423 aa18.73■□□□□ 0.59
PDLIM1-201ENST00000329399 PKN1Q16512 942 aa18.73■□□□□ 0.59
PDLIM1-201ENST00000329399 CCDC148Q8NFR7 591 aa18.73■□□□□ 0.59
PDLIM1-201ENST00000329399 CCDC12Q8WUD4 166 aaPredicted RBP18.73■□□□□ 0.59
PDLIM1-201ENST00000329399 FERMT2Q96AC1 680 aa18.73■□□□□ 0.59
PDLIM1-201ENST00000329399 ZFP91Q96JP5 570 aaPredicted RBP18.73■□□□□ 0.59
PDLIM1-201ENST00000329399 ADD3Q9UEY8 706 aaKnown RBP18.73■□□□□ 0.59
PDLIM1-201ENST00000329399 MORC2Q9Y6X9 1032 aaPredicted RBP18.73■□□□□ 0.59
PDLIM1-201ENST00000329399 ALPK3Q96L96 1907 aa18.73■□□□□ 0.59
PDLIM1-201ENST00000329399 NASPP49321 788 aaPredicted RBP18.72■□□□□ 0.59
PDLIM1-201ENST00000329399 LRRC26Q2I0M4 334 aa18.72■□□□□ 0.59
PDLIM1-201ENST00000329399 RILPL1Q5EBL4 403 aa18.72■□□□□ 0.59
PDLIM1-201ENST00000329399 CCSAPQ6IQ19 270 aaPredicted RBP18.72■□□□□ 0.59
PDLIM1-201ENST00000329399 TYW1BQ6NUM6 668 aa18.72■□□□□ 0.59
PDLIM1-201ENST00000329399 MCF2L2Q86YR7 1114 aa18.72■□□□□ 0.59
PDLIM1-201ENST00000329399 NOSTRINQ8IVI9 506 aa18.72■□□□□ 0.59
PDLIM1-201ENST00000329399 DNERQ8NFT8 737 aa18.72■□□□□ 0.59
PDLIM1-201ENST00000329399 IL31RAQ8NI17 732 aa18.72■□□□□ 0.59
PDLIM1-201ENST00000329399 GPKOWQ92917 476 aaPredicted RBP eCLIP18.72■□□□□ 0.59
PDLIM1-201ENST00000329399 RMDN3Q96TC7 470 aa18.72■□□□□ 0.59
PDLIM1-201ENST00000329399 PHF20Q9BVI0 1012 aa18.72■□□□□ 0.59
PDLIM1-201ENST00000329399 GNEQ9Y223 722 aaKnown RBP18.72■□□□□ 0.59
PDLIM1-201ENST00000329399 H0YGN5 161 aa18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 DNM1LO00429 736 aa18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 DTNBO60941 627 aa18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 DUSP11O75319 330 aaKnown RBP18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 CAPN2P17655 700 aa18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 EIF2AK2P19525 551 aaKnown RBP18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 ATN1P54259 1190 aaPredicted RBP18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 ZNF445P59923 1031 aa18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 TNFAIP2Q03169 654 aa18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 USP17L6PQ6QN14 398 aa18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 ARRDC4Q8NCT1 418 aa18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 KLHDC9Q8NEP7 349 aa18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 GDPD2Q9HCC8 539 aa18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 TFIP11Q9UBB9 837 aaKnown RBP18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 ARIH2O95376 493 aa18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 BMP15O95972 392 aa18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 KRT2P35908 639 aa18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 BEX3Q00994 111 aa18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 CAVIN1Q6NZI2 390 aaKnown RBP18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 FCHSD1Q86WN1 690 aa18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 DIS3L2Q8IYB7 885 aaKnown RBP18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 COPS5Q92905 334 aa18.71■□□□□ 0.59
PDLIM1-201ENST00000329399 AIFM3Q96NN9 605 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms