RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 CABYRO75952 493 aa12.55□□□□□ -0.4
VPS29-208ENST00000550267 AAK1Q2M2I8 961 aa12.55□□□□□ -0.4
VPS29-208ENST00000550267 PLA2G2CQ5R387 149 aa12.55□□□□□ -0.4
VPS29-208ENST00000550267 CHST13Q8NET6 341 aa12.55□□□□□ -0.4
VPS29-208ENST00000550267 VWCEQ96DN2 955 aa12.55□□□□□ -0.4
VPS29-208ENST00000550267 KIF1BPQ96EK5 621 aa12.55□□□□□ -0.4
VPS29-208ENST00000550267 SCLYQ96I15 445 aa12.55□□□□□ -0.4
VPS29-208ENST00000550267 LRFN3Q9BTN0 628 aa12.55□□□□□ -0.4
VPS29-208ENST00000550267 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS29-208ENST00000550267 EPHX3Q9H6B9 360 aa12.55□□□□□ -0.4
VPS29-208ENST00000550267 SLC38A10Q9HBR0 1119 aa12.55□□□□□ -0.4
VPS29-208ENST00000550267 ARPP21Q9UBL0 812 aaPredicted RBP12.55□□□□□ -0.4
VPS29-208ENST00000550267 CLIP2Q9UDT6 1046 aa12.55□□□□□ -0.4
VPS29-208ENST00000550267 FBXO40Q9UH90 709 aa12.55□□□□□ -0.4
VPS29-208ENST00000550267 GNEQ9Y223 722 aaKnown RBP12.55□□□□□ -0.4
VPS29-208ENST00000550267 PCDHA11Q9Y5I1 949 aa12.55□□□□□ -0.4
VPS29-208ENST00000550267 DDX49Q9Y6V7 483 aaKnown RBP12.55□□□□□ -0.4
VPS29-208ENST00000550267 GREB1LQ9C091 1923 aaPredicted RBP12.54□□□□□ -0.4
VPS29-208ENST00000550267 XIRP2A4UGR9 3374 aa12.54□□□□□ -0.4
VPS29-208ENST00000550267 ATP2A2P16615 1042 aaKnown RBP12.54□□□□□ -0.4
VPS29-208ENST00000550267 PSMC6P62333 389 aa12.54□□□□□ -0.4
VPS29-208ENST00000550267 UBE3CQ15386 1083 aa12.54□□□□□ -0.4
VPS29-208ENST00000550267 FSCN1Q16658 493 aaKnown RBP12.54□□□□□ -0.4
VPS29-208ENST00000550267 TLK2Q86UE8 772 aa12.54□□□□□ -0.4
VPS29-208ENST00000550267 RPUSD2Q8IZ73 545 aaKnown RBP12.54□□□□□ -0.4
VPS29-208ENST00000550267 SPSB2Q99619 263 aa12.54□□□□□ -0.4
VPS29-208ENST00000550267 PUS7LQ9H0K6 701 aaKnown RBP12.54□□□□□ -0.4
VPS29-208ENST00000550267 CERS4Q9HA82 394 aa12.54□□□□□ -0.4
VPS29-208ENST00000550267 MKNK2Q9HBH9 465 aa12.54□□□□□ -0.4
VPS29-208ENST00000550267 HOMER2Q9NSB8 354 aa12.54□□□□□ -0.4
VPS29-208ENST00000550267 MTCH2Q9Y6C9 303 aa12.54□□□□□ -0.4
VPS29-208ENST00000550267 DYNC1LI2O43237 492 aaPredicted RBP12.53□□□□□ -0.4
VPS29-208ENST00000550267 CA3P07451 260 aa12.53□□□□□ -0.4
VPS29-208ENST00000550267 SMPD1P17405 629 aa12.53□□□□□ -0.4
VPS29-208ENST00000550267 TTLL4Q14679 1199 aa12.53□□□□□ -0.4
VPS29-208ENST00000550267 PUS10Q3MIT2 529 aaKnown RBP12.53□□□□□ -0.4
VPS29-208ENST00000550267 TMEM63BQ5T3F8 832 aa12.53□□□□□ -0.4
VPS29-208ENST00000550267 KRT40Q6A162 431 aa12.53□□□□□ -0.4
VPS29-208ENST00000550267 LRRC47Q8N1G4 583 aaKnown RBP12.53□□□□□ -0.4
VPS29-208ENST00000550267 FAM133AQ8N9E0 248 aa12.53□□□□□ -0.4
VPS29-208ENST00000550267 AGBL1Q96MI9 1066 aa12.53□□□□□ -0.4
VPS29-208ENST00000550267 HAUS7Q99871 368 aa12.53□□□□□ -0.4
VPS29-208ENST00000550267 AP5M1Q9H0R1 490 aa12.53□□□□□ -0.4
VPS29-208ENST00000550267 FEM1BQ9UK73 627 aa12.53□□□□□ -0.4
VPS29-208ENST00000550267 TCF20Q9UGU0 1960 aaKnown RBP12.52□□□□□ -0.4
VPS29-208ENST00000550267 IGKV6D-41A0A0C4DH26 115 aa12.52□□□□□ -0.41
VPS29-208ENST00000550267 FAM187AA6NFU0 413 aa12.52□□□□□ -0.41
VPS29-208ENST00000550267 EPOPA6NHQ4 379 aa12.52□□□□□ -0.41
VPS29-208ENST00000550267 MINDY4BA8MYZ0 360 aa12.52□□□□□ -0.41
VPS29-208ENST00000550267 ATP5JP18859 108 aa12.52□□□□□ -0.41
VPS29-208ENST00000550267 OAZ1P54368 228 aa12.52□□□□□ -0.41
VPS29-208ENST00000550267 SBK1Q52WX2 424 aa12.52□□□□□ -0.41
VPS29-208ENST00000550267 TMEM67Q5HYA8 995 aa12.52□□□□□ -0.41
VPS29-208ENST00000550267 ACAD9Q9H845 621 aa12.52□□□□□ -0.41
VPS29-208ENST00000550267 A1CFQ9NQ94 594 aaKnown RBP12.52□□□□□ -0.41
VPS29-208ENST00000550267 PDGFCQ9NRA1 345 aa12.52□□□□□ -0.41
VPS29-208ENST00000550267 HCN4Q9Y3Q4 1203 aa12.52□□□□□ -0.41
VPS29-208ENST00000550267 LRRC37A2A6NM11 1700 aa12.51□□□□□ -0.41
VPS29-208ENST00000550267 ASB14A6NK59 587 aa12.51□□□□□ -0.41
VPS29-208ENST00000550267 ZEB2O60315 1214 aa12.51□□□□□ -0.41
VPS29-208ENST00000550267 ARHGEF15O94989 841 aa12.51□□□□□ -0.41
VPS29-208ENST00000550267 CYP2C9P11712 490 aa12.51□□□□□ -0.41
VPS29-208ENST00000550267 POU3F3P20264 500 aaPredicted RBP12.51□□□□□ -0.41
VPS29-208ENST00000550267 TMEM31Q5JXX7 168 aa12.51□□□□□ -0.41
VPS29-208ENST00000550267 EEPD1Q7L9B9 569 aa12.51□□□□□ -0.41
VPS29-208ENST00000550267 DEFB128Q7Z7B8 93 aa12.51□□□□□ -0.41
VPS29-208ENST00000550267 PANK1Q8TE04 598 aa12.51□□□□□ -0.41
VPS29-208ENST00000550267 CEP95Q96GE4 821 aa12.51□□□□□ -0.41
VPS29-208ENST00000550267 STRBPQ96SI9 672 aaKnown RBP12.51□□□□□ -0.41
VPS29-208ENST00000550267 SEZ6LQ9BYH1 1024 aa12.51□□□□□ -0.41
VPS29-208ENST00000550267 ALDH8A1Q9H2A2 487 aaPredicted RBP12.51□□□□□ -0.41
VPS29-208ENST00000550267 RNF146Q9NTX7 359 aa12.51□□□□□ -0.41
VPS29-208ENST00000550267 MCM3APO60318 1980 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 REV3LO60673 3130 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 GSG1L2A8MUP6 293 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 PRDM1O75626 825 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 PFKMP08237 780 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 BMP3P12645 472 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 SLFN13Q68D06 897 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 ZSCAN25Q6NSZ9 544 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 TAPT1Q6NXT6 567 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 FBXO16Q8IX29 292 aaPredicted RBP12.5□□□□□ -0.41
VPS29-208ENST00000550267 GMCL1P1Q8NEA9 526 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 ARNTL2Q8WYA1 636 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 MKL1Q969V6 931 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 CHMP4CQ96CF2 233 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 TRMT13Q9NUP7 481 aaKnown RBP12.5□□□□□ -0.41
VPS29-208ENST00000550267 MTMR4Q9NYA4 1195 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 DAXXQ9UER7 740 aaPredicted RBP12.5□□□□□ -0.41
VPS29-208ENST00000550267 ISY1Q9ULR0 285 aaKnown RBP12.5□□□□□ -0.41
VPS29-208ENST00000550267 COG5Q9UP83 839 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 COG6Q9Y2V7 657 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 ZNF536O15090 1300 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 CHD7Q9P2D1 2997 aa12.5□□□□□ -0.41
VPS29-208ENST00000550267 TNKSO95271 1327 aa12.49□□□□□ -0.41
VPS29-208ENST00000550267 FAM86C2PA6NEL3 165 aa12.49□□□□□ -0.41
VPS29-208ENST00000550267 TMEM232C9JQI7 657 aa12.49□□□□□ -0.41
VPS29-208ENST00000550267 TAP1Q03518 808 aa12.49□□□□□ -0.41
VPS29-208ENST00000550267 IQSEC1Q6DN90 963 aa12.49□□□□□ -0.41
VPS29-208ENST00000550267 SIRT2Q8IXJ6 389 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms