RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 STK24Q9Y6E0 443 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 H0YIN7 160 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 KRT9P35527 623 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 FXR1P51114 621 aaKnown RBP eCLIP13.39□□□□□ -0.27
NUP54-202ENST00000502850 SCNN1DP51172 638 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 AP3B2Q13367 1082 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 CC2D2BQ6DHV5 1058 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 MOXD1Q6UVY6 613 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 RAD9BQ6WBX8 426 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 SMAP1Q8IYB5 467 aaPredicted RBP13.39□□□□□ -0.27
NUP54-202ENST00000502850 SUPT20HQ8NEM7 779 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 OR8K1Q8NGG5 319 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 COA7Q96BR5 231 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 DESI2Q9BSY9 194 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 MMTAG2Q9BU76 263 aaKnown RBP13.39□□□□□ -0.27
NUP54-202ENST00000502850 TMEM260Q9NX78 707 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 MAPK8IP1Q9UQF2 711 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 LUC7L2Q9Y383 392 aaKnown RBP13.39□□□□□ -0.27
NUP54-202ENST00000502850 MRFAP1Q9Y605 127 aa13.39□□□□□ -0.27
NUP54-202ENST00000502850 TRIM49BA6NDI0 452 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 MARCH6O60337 910 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 TADA3O75528 432 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 EIF6P56537 245 aaKnown RBP13.38□□□□□ -0.27
NUP54-202ENST00000502850 LRRC63Q05C16 580 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 TRAF1Q13077 416 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 FIGNQ5HY92 759 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 FKBP15Q5T1M5 1219 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 TMEM179Q6ZVK1 233 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 C2CD5Q86YS7 1000 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 IRF2BP1Q8IU81 584 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 CREBRFQ8IUR6 639 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 SNX29Q8TEQ0 813 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 RAD54LQ92698 747 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 CNKSR1Q969H4 720 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 ZNF622Q969S3 477 aaKnown RBP eCLIP13.38□□□□□ -0.27
NUP54-202ENST00000502850 KIFC2Q96AC6 838 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 PLIN2Q99541 437 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 PSTPIP2Q9H939 334 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 ZNHIT6Q9NWK9 470 aaKnown RBP13.38□□□□□ -0.27
NUP54-202ENST00000502850 DDX25Q9UHL0 483 aaKnown RBP13.38□□□□□ -0.27
NUP54-202ENST00000502850 DDX41Q9UJV9 622 aaKnown RBP13.38□□□□□ -0.27
NUP54-202ENST00000502850 CAPN11Q9UMQ6 739 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 MYH7BA7E2Y1 1941 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 SBF1O95248 1867 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 PSME4Q14997 1843 aa13.38□□□□□ -0.27
NUP54-202ENST00000502850 PRKCSHP14314 528 aaPredicted RBP13.37□□□□□ -0.27
NUP54-202ENST00000502850 H2AFXP16104 143 aaPredicted RBP13.37□□□□□ -0.27
NUP54-202ENST00000502850 MTIF2P46199 727 aaKnown RBP13.37□□□□□ -0.27
NUP54-202ENST00000502850 USP11P51784 963 aa13.37□□□□□ -0.27
NUP54-202ENST00000502850 ATP2B2Q01814 1243 aa13.37□□□□□ -0.27
NUP54-202ENST00000502850 PPP2R3AQ06190 1150 aa13.37□□□□□ -0.27
NUP54-202ENST00000502850 GRB10Q13322 594 aa13.37□□□□□ -0.27
NUP54-202ENST00000502850 CERKLQ49MI3 558 aaPredicted RBP13.37□□□□□ -0.27
NUP54-202ENST00000502850 GRIPAP1Q4V328 841 aa13.37□□□□□ -0.27
NUP54-202ENST00000502850 TMEM119Q4V9L6 283 aa13.37□□□□□ -0.27
NUP54-202ENST00000502850 GUF1Q8N442 669 aaKnown RBP13.37□□□□□ -0.27
NUP54-202ENST00000502850 CEP112Q8N8E3 955 aa13.37□□□□□ -0.27
NUP54-202ENST00000502850 EHBP1Q8NDI1 1231 aa13.37□□□□□ -0.27
NUP54-202ENST00000502850 ZNF507Q8TCN5 953 aa13.37□□□□□ -0.27
NUP54-202ENST00000502850 CNOT6LQ96LI5 555 aaKnown RBP13.37□□□□□ -0.27
NUP54-202ENST00000502850 DNAJC7Q99615 494 aa13.37□□□□□ -0.27
NUP54-202ENST00000502850 TSG101Q99816 390 aa13.37□□□□□ -0.27
NUP54-202ENST00000502850 TUBGCP2Q9BSJ2 902 aa13.37□□□□□ -0.27
NUP54-202ENST00000502850 MRPL44Q9H9J2 332 aaKnown RBP13.37□□□□□ -0.27
NUP54-202ENST00000502850 BMP2KQ9NSY1 1161 aaPredicted RBP13.37□□□□□ -0.27
NUP54-202ENST00000502850 ATRNL1Q5VV63 1379 aa13.37□□□□□ -0.27
NUP54-202ENST00000502850 A0A1W2PQJ5 194 aa13.36□□□□□ -0.27
NUP54-202ENST00000502850 PES1O00541 588 aaKnown RBP13.36□□□□□ -0.27
NUP54-202ENST00000502850 SLC37A4O43826 429 aa13.36□□□□□ -0.27
NUP54-202ENST00000502850 ECE2O60344 883 aa13.36□□□□□ -0.27
NUP54-202ENST00000502850 ENTPD3O75355 529 aa13.36□□□□□ -0.27
NUP54-202ENST00000502850 KIF20AO95235 890 aa13.36□□□□□ -0.27
NUP54-202ENST00000502850 IPO7O95373 1038 aaKnown RBP13.36□□□□□ -0.27
NUP54-202ENST00000502850 TDP2O95551 362 aa13.36□□□□□ -0.27
NUP54-202ENST00000502850 SLC1A4P43007 532 aa13.36□□□□□ -0.27
NUP54-202ENST00000502850 ERCC6LQ2NKX8 1250 aa13.36□□□□□ -0.27
NUP54-202ENST00000502850 DACT2Q5SW24 774 aa13.36□□□□□ -0.27
NUP54-202ENST00000502850 CENPPQ6IPU0 288 aa13.36□□□□□ -0.27
NUP54-202ENST00000502850 FBXO38Q6PIJ6 1188 aa13.36□□□□□ -0.27
NUP54-202ENST00000502850 SLFN12Q8IYM2 578 aa13.36□□□□□ -0.27
NUP54-202ENST00000502850 GMCL1P1Q8NEA9 526 aa13.36□□□□□ -0.27
NUP54-202ENST00000502850 GOLGA1Q92805 767 aa13.36□□□□□ -0.27
NUP54-202ENST00000502850 WDR24Q96S15 920 aa13.36□□□□□ -0.27
NUP54-202ENST00000502850 DUSP9Q99956 384 aaKnown RBP13.36□□□□□ -0.27
NUP54-202ENST00000502850 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.36□□□□□ -0.27
NUP54-202ENST00000502850 V9GYY5 206 aaPredicted RBP13.36□□□□□ -0.27
NUP54-202ENST00000502850 CTAGE9A4FU28 777 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 POTEB2H3BUK9 544 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 CYLC1P35663 651 aaPredicted RBP13.35□□□□□ -0.27
NUP54-202ENST00000502850 RBM5P52756 815 aaKnown RBP eCLIP13.35□□□□□ -0.27
NUP54-202ENST00000502850 KRT83P78385 493 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 STK4Q13043 487 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 NAA30Q147X3 362 aaPredicted RBP13.35□□□□□ -0.27
NUP54-202ENST00000502850 MTF1Q14872 753 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 HYIQ5T013 277 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 C9orf131Q5VYM1 1079 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 SLFN13Q68D06 897 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 TATDN1Q6P1N9 297 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 ZNF662Q6ZS27 426 aa13.35□□□□□ -0.27
NUP54-202ENST00000502850 ZSCAN29Q8IWY8 852 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms