RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PA2G4Q9UQ80 394 aaKnown RBP14.41□□□□□ -0.1
COL6A3-209ENST00000472056 UHRF1BP1LA0JNW5 1464 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 KDM5CP41229 1560 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 DDX5P17844 614 aaKnown RBP14.41□□□□□ -0.1
COL6A3-209ENST00000472056 OR9Q1Q8NGQ5 310 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 SCYL1Q96KG9 808 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 METTL22Q9BUU2 404 aaPredicted RBP14.41□□□□□ -0.1
COL6A3-209ENST00000472056 MYH3P11055 1940 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 NNTQ13423 1086 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 CAPRIN2Q6IMN6 1127 aaKnown RBP14.41□□□□□ -0.1
COL6A3-209ENST00000472056 SARM1Q6SZW1 724 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 DZIP3Q86Y13 1208 aaKnown RBP14.41□□□□□ -0.1
COL6A3-209ENST00000472056 VIPAS39Q9H9C1 493 aa14.41□□□□□ -0.1
COL6A3-209ENST00000472056 GRID2IPA4D2P6 1211 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 A6NJR5 290 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 NFKBIAP25963 317 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 FKBP3Q00688 224 aaKnown RBP14.4□□□□□ -0.1
COL6A3-209ENST00000472056 LRRC63Q05C16 580 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 TFCP2Q12800 502 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 MAGOHBQ96A72 148 aaKnown RBP14.4□□□□□ -0.1
COL6A3-209ENST00000472056 ADCY9O60503 1353 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 ARHGEF37A1IGU5 675 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 PNOCQ13519 176 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 ABTB1Q969K4 478 aaPredicted RBP14.4□□□□□ -0.1
COL6A3-209ENST00000472056 TRIM55Q9BYV6 548 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 USP40Q9NVE5 1235 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 GOLGA8TH3BQL2 631 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 GOLGA8MH3BSY2 632 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 NOP56O00567 594 aaKnown RBP14.4□□□□□ -0.1
COL6A3-209ENST00000472056 KRT16P08779 473 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 GOLGA8HP0CJ92 632 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 U2AF1L4Q8WU68 220 aaKnown RBP14.4□□□□□ -0.1
COL6A3-209ENST00000472056 DIABLOQ9NR28 239 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 EXOC1LA0A1B0GW35 172 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 CCDC78A2IDD5 438 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 STXBP3O00186 592 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 GYG2O15488 501 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 KRT37O76014 449 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 GCFC2P16383 781 aaKnown RBP14.4□□□□□ -0.1
COL6A3-209ENST00000472056 WDR75Q8IWA0 830 aaKnown RBP14.4□□□□□ -0.1
COL6A3-209ENST00000472056 RHOT2Q8IXI1 618 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 TADA3O75528 432 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 COPB1P53618 953 aaKnown RBP14.4□□□□□ -0.1
COL6A3-209ENST00000472056 CENPUQ71F23 418 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 PLBD2Q8NHP8 589 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 PSMB7Q99436 277 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 AZI2Q9H6S1 392 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 HEXIM1O94992 359 aaKnown RBP14.4□□□□□ -0.1
COL6A3-209ENST00000472056 SYCE1LA8MT33 242 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 HDAC11Q96DB2 347 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 TUBGCP2Q9BSJ2 902 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 C19orf44Q9H6X5 657 aa14.4□□□□□ -0.1
COL6A3-209ENST00000472056 CPP00450 1065 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 PDE1BQ01064 536 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 MAN2A1Q16706 1144 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 C8orf58Q8NAV2 365 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 ADAM21Q9UKJ8 722 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 ZNF148Q9UQR1 794 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 SBNO1A3KN83 1393 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 MAP2P11137 1827 aaKnown RBP14.39□□□□□ -0.11
COL6A3-209ENST00000472056 TNNI1P19237 187 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 NACA2Q9H009 215 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 TMEM247A6NEH6 219 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 MIF4GDA9UHW6 222 aaKnown RBP14.39□□□□□ -0.11
COL6A3-209ENST00000472056 ANO9A1A5B4 782 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 MBD4O95243 580 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 SERPING1P05155 500 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 CLCN6P51797 869 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 ARHGEF25Q86VW2 580 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 ZCRB1Q8TBF4 217 aaKnown RBP14.39□□□□□ -0.11
COL6A3-209ENST00000472056 MED7O43513 233 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 MFAP3P55082 362 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 PDIK1LQ8N165 341 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 SLC1A4P43007 532 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 ZBED6P86452 979 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 ING2Q9H160 280 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 EPB41L5Q9HCM4 733 aa14.39□□□□□ -0.11
COL6A3-209ENST00000472056 TNNC2P02585 160 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 SGO2Q562F6 1265 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 NCAPH2Q6IBW4 605 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 HIBCHQ6NVY1 386 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-209ENST00000472056 FAM178BQ8IXR5 827 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 FBXL13Q8NEE6 735 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 CDC42BPBQ9Y5S2 1711 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 ACEP12821 1306 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 KIAA0556O60303 1618 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 OR52Z1P0C646 297 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 TERB1Q8NA31 727 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 FGD4Q96M96 766 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 MPP6Q9NZW5 540 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 PCDHA12Q9UN75 941 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 GAS7O60861 476 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 GGPS1O95749 300 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 NUDCD3Q8IVD9 361 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 LPIN2Q92539 896 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 THAP9Q9H5L6 903 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 GADD45BO75293 160 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-209ENST00000472056 C4BPBP20851 252 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 AP1B1Q10567 949 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 FAM129AQ9BZQ8 928 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms