RNA–Protein interactions for RNA: ENST00000589266.5

CIRBP-223, Transcript of cold inducible RNA binding protein, human

TSL 3

Gene CIRBP, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIRBP-223	ENST00000589266	PDC	P20941	246 aa		28.88	■■■□□ 2.21
CIRBP-223	ENST00000589266	HERVK_113	P62684	666 aa		28.88	■■■□□ 2.21
CIRBP-223	ENST00000589266	QRICH1	Q2TAL8	776 aa		28.88	■■■□□ 2.21
CIRBP-223	ENST00000589266	HOMER1	Q86YM7	354 aa		28.88	■■■□□ 2.21
CIRBP-223	ENST00000589266	ATG4C	Q96DT6	458 aa		28.88	■■■□□ 2.21
CIRBP-223	ENST00000589266	AMN	Q9BXJ7	453 aa		28.88	■■■□□ 2.21
CIRBP-223	ENST00000589266	SH3GLB2	Q9NR46	395 aa		28.88	■■■□□ 2.21
CIRBP-223	ENST00000589266	CTDP1	Q9Y5B0	961 aa	Predicted RBP	28.88	■■■□□ 2.21
CIRBP-223	ENST00000589266		A0A0G2JMZ2	1700 aa		28.88	■■■□□ 2.21
CIRBP-223	ENST00000589266	UNC80	Q8N2C7	3258 aa		28.87	■■■□□ 2.21
CIRBP-223	ENST00000589266	XBP1	P17861	261 aa		28.87	■■■□□ 2.21
CIRBP-223	ENST00000589266	CYP2B6	P20813	491 aa		28.87	■■■□□ 2.21
CIRBP-223	ENST00000589266	SLC4A3	P48751	1232 aa		28.87	■■■□□ 2.21
CIRBP-223	ENST00000589266	MAP3K21	Q5TCX8	1036 aa		28.87	■■■□□ 2.21
CIRBP-223	ENST00000589266	MORF4L1	Q9UBU8	362 aa		28.87	■■■□□ 2.21
CIRBP-223	ENST00000589266	ICAM1	P05362	532 aa		28.86	■■■□□ 2.21
CIRBP-223	ENST00000589266	PRKAR2A	P13861	404 aa	Known RBP	28.86	■■■□□ 2.21
CIRBP-223	ENST00000589266	FBXO11	Q86XK2	927 aa		28.86	■■■□□ 2.21
CIRBP-223	ENST00000589266	REPS2	Q8NFH8	660 aa		28.86	■■■□□ 2.21
CIRBP-223	ENST00000589266	CCDC12	Q8WUD4	166 aa	Predicted RBP	28.86	■■■□□ 2.21
CIRBP-223	ENST00000589266	ALG1	Q9BT22	464 aa		28.86	■■■□□ 2.21
CIRBP-223	ENST00000589266	FOXD4L1	Q9NU39	408 aa		28.86	■■■□□ 2.21
CIRBP-223	ENST00000589266	PPP1R18	Q6NYC8	613 aa		28.85	■■■□□ 2.21
CIRBP-223	ENST00000589266	TEX2	Q8IWB9	1127 aa		28.85	■■■□□ 2.21
CIRBP-223	ENST00000589266	NUDT12	Q9BQG2	462 aa		28.85	■■■□□ 2.21
CIRBP-223	ENST00000589266	BARHL2	Q9NY43	387 aa		28.85	■■■□□ 2.21
CIRBP-223	ENST00000589266	RABGAP1	Q9Y3P9	1069 aa		28.85	■■■□□ 2.21
CIRBP-223	ENST00000589266	PFAS	O15067	1338 aa		28.85	■■■□□ 2.21
CIRBP-223	ENST00000589266	PLXNB2	O15031	1838 aa		28.85	■■■□□ 2.21
CIRBP-223	ENST00000589266	PPFIA3	O75145	1194 aa		28.84	■■■□□ 2.21
CIRBP-223	ENST00000589266	XRCC5	P13010	732 aa	Known RBP	28.84	■■■□□ 2.21
CIRBP-223	ENST00000589266	PIBF1	Q8WXW3	757 aa		28.84	■■■□□ 2.21
CIRBP-223	ENST00000589266	ZNF536	O15090	1300 aa		28.84	■■■□□ 2.21
CIRBP-223	ENST00000589266	hCG_1642624	A0A1W2PR95	340 aa		28.83	■■■□□ 2.21
CIRBP-223	ENST00000589266	WWC2	Q6AWC2	1192 aa		28.83	■■■□□ 2.21
CIRBP-223	ENST00000589266	SAMD1	Q6SPF0	538 aa	Predicted RBP	28.83	■■■□□ 2.21
CIRBP-223	ENST00000589266	TRMT44	Q8IYL2	757 aa	Known RBP	28.83	■■■□□ 2.21
CIRBP-223	ENST00000589266	CCDC148	Q8NFR7	591 aa		28.83	■■■□□ 2.21
CIRBP-223	ENST00000589266	PPP1R11	O60927	126 aa	Predicted RBP	28.82	■■■□□ 2.2
CIRBP-223	ENST00000589266	TRIM29	Q14134	588 aa		28.82	■■■□□ 2.2
CIRBP-223	ENST00000589266	TKFC	Q3LXA3	575 aa		28.82	■■■□□ 2.2
CIRBP-223	ENST00000589266	LARP1B	Q659C4	914 aa	Known RBP	28.82	■■■□□ 2.2
CIRBP-223	ENST00000589266	HEATR3	Q7Z4Q2	680 aa		28.82	■■■□□ 2.2
CIRBP-223	ENST00000589266	SPRYD3	Q8NCJ5	442 aa		28.82	■■■□□ 2.2
CIRBP-223	ENST00000589266	SOCS4	Q8WXH5	440 aa		28.82	■■■□□ 2.2
CIRBP-223	ENST00000589266	C8orf76	Q96K31	380 aa		28.82	■■■□□ 2.2
CIRBP-223	ENST00000589266	COL25A1	Q9BXS0	654 aa	Predicted RBP	28.82	■■■□□ 2.2
CIRBP-223	ENST00000589266	TEX13B	Q9BXU2	312 aa		28.82	■■■□□ 2.2
CIRBP-223	ENST00000589266	ZNF214	Q9UL59	606 aa	Predicted RBP	28.82	■■■□□ 2.2
CIRBP-223	ENST00000589266	ABCB11	O95342	1321 aa		28.82	■■■□□ 2.2
CIRBP-223	ENST00000589266	ESYT2	A0FGR8	921 aa		28.81	■■■□□ 2.2
CIRBP-223	ENST00000589266	STXBP3	O00186	592 aa		28.81	■■■□□ 2.2
CIRBP-223	ENST00000589266	COL6A1	P12109	1028 aa		28.81	■■■□□ 2.2
CIRBP-223	ENST00000589266	TMEM132B	Q14DG7	1078 aa		28.81	■■■□□ 2.2
CIRBP-223	ENST00000589266	GALNT17	Q6IS24	598 aa		28.81	■■■□□ 2.2
CIRBP-223	ENST00000589266	CCDC174	Q6PII3	467 aa		28.81	■■■□□ 2.2
CIRBP-223	ENST00000589266	MAF1	Q9H063	256 aa		28.81	■■■□□ 2.2
CIRBP-223	ENST00000589266	PCDHA1	Q9Y5I3	950 aa		28.81	■■■□□ 2.2
CIRBP-223	ENST00000589266	COL11A1	P12107	1806 aa	Predicted RBP	28.8	■■■□□ 2.2
CIRBP-223	ENST00000589266	COPB2	P35606	906 aa		28.8	■■■□□ 2.2
CIRBP-223	ENST00000589266	SNAP25	P60880	206 aa		28.8	■■■□□ 2.2
CIRBP-223	ENST00000589266	GPRC5A	Q8NFJ5	357 aa		28.8	■■■□□ 2.2
CIRBP-223	ENST00000589266	FBXO18	Q8NFZ0	1043 aa		28.8	■■■□□ 2.2
CIRBP-223	ENST00000589266	GLT8D2	Q9H1C3	349 aa		28.8	■■■□□ 2.2
CIRBP-223	ENST00000589266	CCPG1	Q9ULG6	757 aa		28.8	■■■□□ 2.2
CIRBP-223	ENST00000589266	DTNB	O60941	627 aa		28.79	■■■□□ 2.2
CIRBP-223	ENST00000589266	STAT3	P40763	770 aa		28.79	■■■□□ 2.2
CIRBP-223	ENST00000589266	POTEE	Q6S8J3	1075 aa		28.79	■■■□□ 2.2
CIRBP-223	ENST00000589266	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	28.79	■■■□□ 2.2
CIRBP-223	ENST00000589266	AIFM3	Q96NN9	605 aa		28.79	■■■□□ 2.2
CIRBP-223	ENST00000589266	RAVER2	Q9HCJ3	691 aa	Known RBP	28.79	■■■□□ 2.2
CIRBP-223	ENST00000589266	RBPJL	Q9UBG7	517 aa		28.79	■■■□□ 2.2
CIRBP-223	ENST00000589266	MRPL11	Q9Y3B7	192 aa	Known RBP	28.79	■■■□□ 2.2
CIRBP-223	ENST00000589266	SYT1	P21579	422 aa		28.78	■■■□□ 2.2
CIRBP-223	ENST00000589266	CALML3	P27482	149 aa		28.78	■■■□□ 2.2
CIRBP-223	ENST00000589266	DDIT3	P35638	169 aa		28.78	■■■□□ 2.2
CIRBP-223	ENST00000589266	NAPA	P54920	295 aa		28.78	■■■□□ 2.2
CIRBP-223	ENST00000589266	MDM2	Q00987	491 aa	Predicted RBP	28.78	■■■□□ 2.2
CIRBP-223	ENST00000589266	CACNB2	Q08289	660 aa	Predicted RBP	28.78	■■■□□ 2.2
CIRBP-223	ENST00000589266	RIOX2	Q8IUF8	465 aa		28.78	■■■□□ 2.2
CIRBP-223	ENST00000589266	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	28.78	■■■□□ 2.2
CIRBP-223	ENST00000589266	CPXCR1	Q8N123	301 aa		28.78	■■■□□ 2.2
CIRBP-223	ENST00000589266	SAMD3	Q8N6K7	520 aa		28.78	■■■□□ 2.2
CIRBP-223	ENST00000589266	ZMYND12	Q9H0C1	365 aa		28.78	■■■□□ 2.2
CIRBP-223	ENST00000589266	VPS54	Q9P1Q0	977 aa		28.78	■■■□□ 2.2
CIRBP-223	ENST00000589266	CNMD	O75829	334 aa		28.77	■■■□□ 2.2
CIRBP-223	ENST00000589266	GNA11	P29992	359 aa		28.77	■■■□□ 2.2
CIRBP-223	ENST00000589266	MAPK4	P31152	587 aa		28.77	■■■□□ 2.2
CIRBP-223	ENST00000589266	LRRC26	Q2I0M4	334 aa		28.77	■■■□□ 2.2
CIRBP-223	ENST00000589266	KRT40	Q6A162	431 aa		28.77	■■■□□ 2.2
CIRBP-223	ENST00000589266	FAM109B	Q6ICB4	259 aa	Predicted RBP	28.77	■■■□□ 2.2
CIRBP-223	ENST00000589266	CCAR1	Q8IX12	1150 aa	Known RBP	28.77	■■■□□ 2.2
CIRBP-223	ENST00000589266	AGBL1	Q96MI9	1066 aa		28.77	■■■□□ 2.2
CIRBP-223	ENST00000589266	PHF20	Q9BVI0	1012 aa		28.77	■■■□□ 2.2
CIRBP-223	ENST00000589266	SPATC1L	Q9H0A9	340 aa		28.77	■■■□□ 2.2
CIRBP-223	ENST00000589266	TXNRD2	Q9NNW7	524 aa		28.77	■■■□□ 2.2
CIRBP-223	ENST00000589266	BTBD7	Q9P203	1132 aa		28.77	■■■□□ 2.2
CIRBP-223	ENST00000589266	CIZ1	Q9ULV3	898 aa	Predicted RBP	28.77	■■■□□ 2.2
CIRBP-223	ENST00000589266	POTEB2	H3BUK9	544 aa		28.76	■■■□□ 2.19
CIRBP-223	ENST00000589266	SLC25A27	O95847	323 aa		28.76	■■■□□ 2.19

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms