RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 TAF1P21675 1872 aa20.21■□□□□ 0.83
CCM2-209ENST00000477605 TARSL2A2RTX5 802 aaKnown RBP20.21■□□□□ 0.83
CCM2-209ENST00000477605 H3BQF6 201 aa20.21■□□□□ 0.83
CCM2-209ENST00000477605 RHOXF2BP0C7M4 288 aa20.21■□□□□ 0.83
CCM2-209ENST00000477605 NAPAP54920 295 aa20.21■□□□□ 0.83
CCM2-209ENST00000477605 VSNL1P62760 191 aa20.21■□□□□ 0.83
CCM2-209ENST00000477605 PDE4DQ08499 809 aa20.21■□□□□ 0.83
CCM2-209ENST00000477605 ZNF804AQ7Z570 1209 aa20.21■□□□□ 0.83
CCM2-209ENST00000477605 NEK8Q86SG6 692 aa20.21■□□□□ 0.83
CCM2-209ENST00000477605 RRP36Q96EU6 259 aaKnown RBP20.21■□□□□ 0.83
CCM2-209ENST00000477605 RHOXF2Q9BQY4 288 aa20.21■□□□□ 0.83
CCM2-209ENST00000477605 TSGA10Q9BZW7 698 aa20.21■□□□□ 0.83
CCM2-209ENST00000477605 CASZ1Q86V15 1759 aa20.21■□□□□ 0.83
CCM2-209ENST00000477605 B4DLN1 442 aa20.2■□□□□ 0.82
CCM2-209ENST00000477605 PES1O00541 588 aaKnown RBP20.2■□□□□ 0.82
CCM2-209ENST00000477605 TRIM21P19474 475 aaKnown RBP20.2■□□□□ 0.82
CCM2-209ENST00000477605 USP14P54578 494 aa20.2■□□□□ 0.82
CCM2-209ENST00000477605 HNRNPH2P55795 449 aaKnown RBP20.2■□□□□ 0.82
CCM2-209ENST00000477605 ST5P78524 1137 aa20.2■□□□□ 0.82
CCM2-209ENST00000477605 MAP9Q49MG5 647 aa20.2■□□□□ 0.82
CCM2-209ENST00000477605 KIAA1328Q86T90 577 aa20.2■□□□□ 0.82
CCM2-209ENST00000477605 NEDD1Q8NHV4 660 aa20.2■□□□□ 0.82
CCM2-209ENST00000477605 JAKMIP2Q96AA8 810 aa20.2■□□□□ 0.82
CCM2-209ENST00000477605 PDE11AQ9HCR9 933 aa20.2■□□□□ 0.82
CCM2-209ENST00000477605 ABCB11O95342 1321 aa20.2■□□□□ 0.82
CCM2-209ENST00000477605 MCM6Q14566 821 aa20.2■□□□□ 0.82
CCM2-209ENST00000477605 FKBP15Q5T1M5 1219 aa20.2■□□□□ 0.82
CCM2-209ENST00000477605 SOGA3Q5TF21 947 aa20.2■□□□□ 0.82
CCM2-209ENST00000477605 C16orf86Q6ZW13 317 aa20.2■□□□□ 0.82
CCM2-209ENST00000477605 CALML4Q96GE6 196 aa20.2■□□□□ 0.82
CCM2-209ENST00000477605 CNOT6LQ96LI5 555 aaKnown RBP20.2■□□□□ 0.82
CCM2-209ENST00000477605 STX8Q9UNK0 236 aa20.2■□□□□ 0.82
CCM2-209ENST00000477605 SMCO2A6NFE2 343 aa20.19■□□□□ 0.82
CCM2-209ENST00000477605 PLCG2P16885 1265 aa20.19■□□□□ 0.82
CCM2-209ENST00000477605 HNRNPH3P31942 346 aaKnown RBP20.19■□□□□ 0.82
CCM2-209ENST00000477605 CASP8Q14790 479 aa20.19■□□□□ 0.82
CCM2-209ENST00000477605 ANKRD40Q6AI12 368 aa20.19■□□□□ 0.82
CCM2-209ENST00000477605 NOA1Q8NC60 698 aaKnown RBP20.19■□□□□ 0.82
CCM2-209ENST00000477605 TGFBRAP1Q8WUH2 860 aa20.19■□□□□ 0.82
CCM2-209ENST00000477605 PURBQ96QR8 312 aaKnown RBP20.19■□□□□ 0.82
CCM2-209ENST00000477605 NHEJ1Q9H9Q4 299 aaPredicted RBP20.19■□□□□ 0.82
CCM2-209ENST00000477605 MED4Q9NPJ6 270 aa20.19■□□□□ 0.82
CCM2-209ENST00000477605 STK17AQ9UEE5 414 aa20.19■□□□□ 0.82
CCM2-209ENST00000477605 PVALEFA0A1B0GWK0 134 aa20.18■□□□□ 0.82
CCM2-209ENST00000477605 CCNT1O60563 726 aaKnown RBP20.18■□□□□ 0.82
CCM2-209ENST00000477605 FGFR1OPO95684 399 aaKnown RBP20.18■□□□□ 0.82
CCM2-209ENST00000477605 MTIF2P46199 727 aaKnown RBP20.18■□□□□ 0.82
CCM2-209ENST00000477605 NOVP48745 357 aa20.18■□□□□ 0.82
CCM2-209ENST00000477605 ASIC1P78348 528 aa20.18■□□□□ 0.82
CCM2-209ENST00000477605 GRAPQ13588 217 aa20.18■□□□□ 0.82
CCM2-209ENST00000477605 FOXR2Q6PJQ5 311 aa20.18■□□□□ 0.82
CCM2-209ENST00000477605 GRAPLQ8TC17 118 aaPredicted RBP20.18■□□□□ 0.82
CCM2-209ENST00000477605 FAM71BQ8TC56 605 aa20.18■□□□□ 0.82
CCM2-209ENST00000477605 LRRC15Q8TF66 581 aa20.18■□□□□ 0.82
CCM2-209ENST00000477605 SEC63Q9UGP8 760 aaKnown RBP20.18■□□□□ 0.82
CCM2-209ENST00000477605 RASSF10A6NK89 507 aa20.18■□□□□ 0.82
CCM2-209ENST00000477605 LETM2Q2VYF4 491 aa20.18■□□□□ 0.82
CCM2-209ENST00000477605 NCAPH2Q6IBW4 605 aa20.18■□□□□ 0.82
CCM2-209ENST00000477605 IQCEQ6IPM2 695 aa20.18■□□□□ 0.82
CCM2-209ENST00000477605 NOC4LQ9BVI4 516 aaKnown RBP20.18■□□□□ 0.82
CCM2-209ENST00000477605 ANKIB1Q9P2G1 1089 aa20.18■□□□□ 0.82
CCM2-209ENST00000477605 SRP68Q9UHB9 627 aaKnown RBP20.18■□□□□ 0.82
CCM2-209ENST00000477605 STK4Q13043 487 aa20.17■□□□□ 0.82
CCM2-209ENST00000477605 HSP90B2PQ58FF3 399 aa20.17■□□□□ 0.82
CCM2-209ENST00000477605 MIIPQ5JXC2 388 aa20.17■□□□□ 0.82
CCM2-209ENST00000477605 CENPPQ6IPU0 288 aa20.17■□□□□ 0.82
CCM2-209ENST00000477605 GOLGA5Q8TBA6 731 aa20.17■□□□□ 0.82
CCM2-209ENST00000477605 EYA3Q99504 573 aa20.17■□□□□ 0.82
CCM2-209ENST00000477605 PLIN2Q99541 437 aa20.17■□□□□ 0.82
CCM2-209ENST00000477605 RTFDC1Q9BY42 306 aaPredicted RBP20.17■□□□□ 0.82
CCM2-209ENST00000477605 LRRC27Q9C0I9 530 aa20.17■□□□□ 0.82
CCM2-209ENST00000477605 TRIM10Q9UDY6 481 aa20.17■□□□□ 0.82
CCM2-209ENST00000477605 CDK8P49336 464 aa20.17■□□□□ 0.82
CCM2-209ENST00000477605 SV2BQ7L1I2 683 aa20.17■□□□□ 0.82
CCM2-209ENST00000477605 AGPAT5Q9NUQ2 364 aa20.17■□□□□ 0.82
CCM2-209ENST00000477605 CWC15Q9P013 229 aaKnown RBP20.17■□□□□ 0.82
CCM2-209ENST00000477605 JAG2Q9Y219 1238 aa20.17■□□□□ 0.82
CCM2-209ENST00000477605 GPR75-ASB3A0A0A6YYF3 556 aa20.16■□□□□ 0.82
CCM2-209ENST00000477605 ATP1A1P05023 1023 aaKnown RBP20.16■□□□□ 0.82
CCM2-209ENST00000477605 VAV2P52735 878 aa20.16■□□□□ 0.82
CCM2-209ENST00000477605 SLC4A8Q2Y0W8 1093 aa20.16■□□□□ 0.82
CCM2-209ENST00000477605 NEK11Q8NG66 645 aa20.16■□□□□ 0.82
CCM2-209ENST00000477605 LRRC4BQ9NT99 713 aa20.16■□□□□ 0.82
CCM2-209ENST00000477605 RTCBQ9Y3I0 505 aaKnown RBP20.16■□□□□ 0.82
CCM2-209ENST00000477605 FXR2P51116 673 aaKnown RBP eCLIP20.15■□□□□ 0.82
CCM2-209ENST00000477605 KIF5AQ12840 1032 aa20.15■□□□□ 0.82
CCM2-209ENST00000477605 ARHGAP27Q6ZUM4 889 aa20.15■□□□□ 0.82
CCM2-209ENST00000477605 SLF2Q8IX21 1173 aa20.15■□□□□ 0.82
CCM2-209ENST00000477605 SLC44A5Q8NCS7 719 aa20.15■□□□□ 0.82
CCM2-209ENST00000477605 RUBCNQ92622 972 aa20.15■□□□□ 0.82
CCM2-209ENST00000477605 FAM163AQ96GL9 167 aaPredicted RBP20.15■□□□□ 0.82
CCM2-209ENST00000477605 MMTAG2Q9BU76 263 aaKnown RBP20.15■□□□□ 0.82
CCM2-209ENST00000477605 USO1O60763 962 aaKnown RBP20.15■□□□□ 0.82
CCM2-209ENST00000477605 AARSP49588 968 aaKnown RBP eCLIP20.15■□□□□ 0.82
CCM2-209ENST00000477605 PDIA5Q14554 519 aa20.15■□□□□ 0.82
CCM2-209ENST00000477605 SPA17Q15506 151 aa20.15■□□□□ 0.82
CCM2-209ENST00000477605 DIXDC1Q155Q3 683 aa20.15■□□□□ 0.82
CCM2-209ENST00000477605 UNC13DQ70J99 1090 aa20.15■□□□□ 0.82
CCM2-209ENST00000477605 CCDC84Q86UT8 332 aaPredicted RBP20.15■□□□□ 0.82
CCM2-209ENST00000477605 MAPKAPK5Q8IW41 473 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms