RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 CACNB1Q02641 598 aaPredicted RBP12.51□□□□□ -0.41
TCOF1-203ENST00000394269 ZNF658Q5TYW1 1059 aaPredicted RBP12.51□□□□□ -0.41
TCOF1-203ENST00000394269 KRT79Q5XKE5 535 aa12.51□□□□□ -0.41
TCOF1-203ENST00000394269 SLC30A10Q6XR72 485 aa12.51□□□□□ -0.41
TCOF1-203ENST00000394269 TMEM179Q6ZVK1 233 aa12.51□□□□□ -0.41
TCOF1-203ENST00000394269 PRIMPOLQ96LW4 560 aa12.51□□□□□ -0.41
TCOF1-203ENST00000394269 PCMTD1Q96MG8 357 aaPredicted RBP12.51□□□□□ -0.41
TCOF1-203ENST00000394269 BAG1Q99933 345 aaPredicted RBP12.51□□□□□ -0.41
TCOF1-203ENST00000394269 IDI2Q9BXS1 227 aa12.51□□□□□ -0.41
TCOF1-203ENST00000394269 ZBTB22O15209 634 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 SNHG28P0DPA3 235 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 PRR16Q569H4 304 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 TRMT1LQ7Z2T5 733 aaKnown RBP12.5□□□□□ -0.41
TCOF1-203ENST00000394269 NIM1KQ8IY84 436 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 ANKRD20A12PQ8NF67 263 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 PCDHA12Q9UN75 941 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 STAT3P40763 770 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 STK4Q13043 487 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 STIM1Q13586 685 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 NBPF9Q3BBW0 867 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 RSBN1LQ6PCB5 846 aaPredicted RBP12.5□□□□□ -0.41
TCOF1-203ENST00000394269 CCDC47Q96A33 483 aaKnown RBP12.5□□□□□ -0.41
TCOF1-203ENST00000394269 RIC8AQ9NPQ8 531 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 BCS1LQ9Y276 419 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 LAD1O00515 517 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 CFBP00751 764 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 ZNF76P36508 570 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 UBXN1Q04323 297 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 RBL2Q08999 1139 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 LRRC41Q15345 812 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 SV2BQ7L1I2 683 aa12.5□□□□□ -0.41
TCOF1-203ENST00000394269 SPDYE2BA6NHP3 402 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 KCNJ18B7U540 433 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 SPDYE6P0CI01 402 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 BMP3P12645 472 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 KCNJ12Q14500 433 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 MTF1Q14872 753 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 KRT31Q15323 416 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 RTKN2Q8IZC4 609 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 PPP1R13BQ96KQ4 1090 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 CCSER1Q9C0I3 900 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 EHD4Q9H223 541 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 ZNF70Q9UC06 446 aaPredicted RBP12.49□□□□□ -0.41
TCOF1-203ENST00000394269 DNAI1Q9UI46 699 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 GJA3Q9Y6H8 435 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 SLX4Q8IY92 1834 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 PSMA7O14818 248 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 SMARCA1P28370 1054 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 CASP14P31944 242 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 NR1I3Q14994 352 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 FBXO11Q86XK2 927 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 JDP2Q8WYK2 163 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 RAB34Q9BZG1 259 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 MYH1P12882 1939 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 SPDYE3A6NKU9 549 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 FAM83BQ5T0W9 1011 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 CSGALNACT2Q8N6G5 542 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 FEZ1Q99689 392 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 MMTAG2Q9BU76 263 aaKnown RBP12.49□□□□□ -0.41
TCOF1-203ENST00000394269 TRIM9Q9C026 710 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 NYAP2Q9P242 653 aa12.49□□□□□ -0.41
TCOF1-203ENST00000394269 NAV1Q8NEY1 1877 aa12.48□□□□□ -0.41
TCOF1-203ENST00000394269 HDLBPQ00341 1268 aaKnown RBP12.48□□□□□ -0.41
TCOF1-203ENST00000394269 KIF18AQ8NI77 898 aa12.48□□□□□ -0.41
TCOF1-203ENST00000394269 AMNQ9BXJ7 453 aa12.48□□□□□ -0.41
TCOF1-203ENST00000394269 MAGEC2Q9UBF1 373 aaPredicted RBP12.48□□□□□ -0.41
TCOF1-203ENST00000394269 ANKRD31Q8N7Z5 1873 aa12.48□□□□□ -0.41
TCOF1-203ENST00000394269 MEIS1O00470 390 aa12.48□□□□□ -0.41
TCOF1-203ENST00000394269 KRT18P05783 430 aaKnown RBP12.48□□□□□ -0.41
TCOF1-203ENST00000394269 PRPHP41219 470 aa12.48□□□□□ -0.41
TCOF1-203ENST00000394269 NOVP48745 357 aa12.48□□□□□ -0.41
TCOF1-203ENST00000394269 AMPD3Q01432 767 aa12.48□□□□□ -0.41
TCOF1-203ENST00000394269 KCNK18Q7Z418 384 aa12.48□□□□□ -0.41
TCOF1-203ENST00000394269 TBC1D5Q92609 795 aa12.48□□□□□ -0.41
TCOF1-203ENST00000394269 AK8Q96MA6 479 aa12.48□□□□□ -0.41
TCOF1-203ENST00000394269 GLIS2Q9BZE0 524 aaPredicted RBP12.48□□□□□ -0.41
TCOF1-203ENST00000394269 KIAA1024Q9UPX6 916 aa12.48□□□□□ -0.41
TCOF1-203ENST00000394269 DDX60LQ5H9U9 1706 aaKnown RBP12.48□□□□□ -0.41
TCOF1-203ENST00000394269 CEP350Q5VT06 3117 aa12.48□□□□□ -0.41
TCOF1-203ENST00000394269 SOWAHDA6NJG2 315 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 AKR1B15C9JRZ8 316 aaPredicted RBP12.47□□□□□ -0.41
TCOF1-203ENST00000394269 MYO1BO43795 1136 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 RRP9O43818 475 aaKnown RBP12.47□□□□□ -0.41
TCOF1-203ENST00000394269 CXCL9Q07325 125 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 SYDE2Q5VT97 1194 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 TOGARAM2Q6ZUX3 1019 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 CYP2W1Q8TAV3 490 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 LZTFL1Q9NQ48 299 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 FBXO28Q9NVF7 368 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 KBTBD4Q9NVX7 518 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 RWDD2AQ9UIY3 292 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 ESYT2A0FGR8 921 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 EDIL3O43854 480 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 TPM1P09493 284 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 CYP4A11Q02928 519 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 PRAMEF18Q5VWM3 479 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 TATDN1Q6P1N9 297 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 TC2NQ8N9U0 490 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 LARP4BQ92615 738 aaKnown RBP12.47□□□□□ -0.41
TCOF1-203ENST00000394269 CTAGE1Q96RT6 745 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms