RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 F8W8V4 182 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 NAA35Q5VZE5 725 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 ARHGEF18Q6ZSZ5 1173 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 CCDC87Q9NVE4 849 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 DAAM1Q9Y4D1 1078 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 ATP8B3O60423 1300 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 PSDA5PKW4 1024 aaPredicted RBP12.36□□□□□ -0.43
PTPN4-201ENST00000263708 GPAA1O43292 621 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 IL9RQ01113 521 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 OCRLQ01968 901 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 RNF219Q5W0B1 726 aaPredicted RBP12.36□□□□□ -0.43
PTPN4-201ENST00000263708 TAGAPQ8N103 731 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 TRIM58Q8NG06 486 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 DACH2Q96NX9 599 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 CAPS2Q9BXY5 557 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 PCF11O94913 1555 aaKnown RBP12.36□□□□□ -0.43
PTPN4-201ENST00000263708 CFLARO15519 480 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 TTI1O43156 1089 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 FAM178BQ8IXR5 827 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 KCTD6Q8NC69 237 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 IMPACTQ9P2X3 320 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 DDX25Q9UHL0 483 aaKnown RBP12.36□□□□□ -0.43
PTPN4-201ENST00000263708 G3BP2Q9UN86 482 aaKnown RBP12.36□□□□□ -0.43
PTPN4-201ENST00000263708 SMCO2A6NFE2 343 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 NSFP46459 744 aaKnown RBP12.36□□□□□ -0.43
PTPN4-201ENST00000263708 FAM47AQ5JRC9 791 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 RNF207Q6ZRF8 634 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 GOLGA5Q8TBA6 731 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 AP1ARQ63HQ0 302 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 ARMCX5Q6P1M9 558 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 ARHGAP27Q6ZUM4 889 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 TEKT4Q8WW24 435 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 NUDCD1Q96RS6 583 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 GIMAP4Q9NUV9 329 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 TBC1D10BQ4KMP7 808 aaPredicted RBP12.36□□□□□ -0.43
PTPN4-201ENST00000263708 MAP7D3Q8IWC1 876 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 PI4K2BQ8TCG2 481 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 TSC1Q92574 1164 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 TLK1Q9UKI8 766 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 NFE2L3Q9Y4A8 694 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 IBTKQ9P2D0 1353 aaPredicted RBP12.36□□□□□ -0.43
PTPN4-201ENST00000263708 TCP10L2B9ZVM9 353 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 VCPP55072 806 aaKnown RBP12.36□□□□□ -0.43
PTPN4-201ENST00000263708 PABPC4Q13310 644 aaKnown RBP eCLIP12.36□□□□□ -0.43
PTPN4-201ENST00000263708 TRIM15Q9C019 465 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 MORC3Q14149 939 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 HIF1AQ16665 826 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 EPAS1Q99814 870 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 AP5M1Q9H0R1 490 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 NSD2O96028 1365 aa12.36□□□□□ -0.43
PTPN4-201ENST00000263708 MCF2LO15068 1137 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 WBP4O75554 376 aaKnown RBP12.35□□□□□ -0.43
PTPN4-201ENST00000263708 POLR2MP0CAP2 368 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 ZSCAN20P17040 1043 aaPredicted RBP12.35□□□□□ -0.43
PTPN4-201ENST00000263708 HINFPQ9BQA5 517 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 SYNDIG1Q9H7V2 258 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 PPIP5K1Q6PFW1 1433 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 TMED2Q15363 201 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 FAM149B1Q96BN6 582 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 TPCN1Q9ULQ1 816 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 ZNF263O14978 683 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 HDAC1Q13547 482 aaPredicted RBP12.35□□□□□ -0.43
PTPN4-201ENST00000263708 ANO4Q32M45 955 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 SLFN12Q8IYM2 578 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 CHURC1Q8WUH1 139 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 PSTPIP2Q9H939 334 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 SCOCQ9UIL1 159 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 CDK13Q14004 1512 aaKnown RBP12.35□□□□□ -0.43
PTPN4-201ENST00000263708 C16orf87Q6PH81 154 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 C17orf53Q8N3J3 647 aaPredicted RBP12.35□□□□□ -0.43
PTPN4-201ENST00000263708 XAGE2Q96GT9 111 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 BCS1LQ9Y276 419 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 EIF3CLB5ME19 914 aaKnown RBP12.35□□□□□ -0.43
PTPN4-201ENST00000263708 CHEK2O96017 543 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 SKOR1P84550 965 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 EIF3CQ99613 913 aaKnown RBP12.35□□□□□ -0.43
PTPN4-201ENST00000263708 SLC27A2O14975 620 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 MYL7Q01449 175 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 TNFAIP1Q13829 316 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 ELMSAN1Q6PJG2 1045 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 MYOCDQ8IZQ8 938 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 ANKRD44Q8N8A2 993 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 TRIML1Q8N9V2 468 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 GIPC2Q8TF65 315 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 USP40Q9NVE5 1235 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 H0YCG3 227 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 ZSCAN9O15535 394 aaPredicted RBP12.35□□□□□ -0.43
PTPN4-201ENST00000263708 ARHGEF9O43307 516 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 SUN1O94901 812 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 ATP2B4P23634 1241 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 POLA2Q14181 598 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 FBXO31Q5XUX0 539 aaPredicted RBP12.35□□□□□ -0.43
PTPN4-201ENST00000263708 DIS3L2Q8IYB7 885 aaKnown RBP12.35□□□□□ -0.43
PTPN4-201ENST00000263708 BTN2A2Q8WVV5 523 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 IFNAR2P48551 515 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 ZNF75DP51815 510 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 ARHGEF6Q15052 776 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 MAML1Q92585 1016 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 M0R2C6 588 aa12.35□□□□□ -0.43
PTPN4-201ENST00000263708 TFDP1Q14186 410 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms