RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 GOLGA6AQ9NYA3 693 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 PSD3Q9NYI0 1048 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 MYH10P35580 1976 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 RASSF10A6NK89 507 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 TSPY2A6NKD2 308 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 POTEB2H3BUK9 544 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 IVLP07476 585 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 TMTC3Q6ZXV5 915 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 DYMQ7RTS9 669 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 TSEN2Q8NCE0 465 aaKnown RBP13.79□□□□□ -0.2
LDLR-205ENST00000557933 BCAS4Q8TDM0 211 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 FERMT2Q96AC1 680 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 RNF41Q9H4P4 317 aaPredicted RBP13.79□□□□□ -0.2
LDLR-205ENST00000557933 PCNTO95613 3336 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 MYH13Q9UKX3 1938 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 GTPBP6O43824 516 aaPredicted RBP13.79□□□□□ -0.2
LDLR-205ENST00000557933 UBA7P41226 1012 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 GUCY2FP51841 1108 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 TRIM28Q13263 835 aaKnown RBP13.79□□□□□ -0.2
LDLR-205ENST00000557933 FAM98CQ17RN3 349 aaKnown RBP13.79□□□□□ -0.2
LDLR-205ENST00000557933 MAP9Q49MG5 647 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 GLIS3Q8NEA6 775 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 FBXO41Q8TF61 875 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 IFT81Q8WYA0 676 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 TNFRSF25Q93038 417 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 PLA2G12BQ9BX93 195 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 GOLPH3Q9H4A6 298 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 MMRN2Q9H8L6 949 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 CNTNAP5Q8WYK1 1306 aa13.79□□□□□ -0.2
LDLR-205ENST00000557933 USP17L3A6NCW0 530 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 USP17L4A6NCW7 530 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 IPO7O95373 1038 aaKnown RBP13.78□□□□□ -0.2
LDLR-205ENST00000557933 USP17L8P0C7I0 530 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 CYP19A1P11511 503 aaPredicted RBP13.78□□□□□ -0.2
LDLR-205ENST00000557933 SCG2P13521 617 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 PRDX5P30044 214 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 LRRC41Q15345 812 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 USP17L1Q7RTZ2 530 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 KAT2BQ92831 832 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 CDHR2Q9BYE9 1310 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 MAGEC2Q9UBF1 373 aaPredicted RBP13.78□□□□□ -0.2
LDLR-205ENST00000557933 SALL4Q9UJQ4 1053 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 ZC3H4Q9UPT8 1303 aaKnown RBP13.78□□□□□ -0.2
LDLR-205ENST00000557933 NIP7Q9Y221 180 aaKnown RBP eCLIP13.78□□□□□ -0.2
LDLR-205ENST00000557933 GNGT1P63211 74 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 ASIC1P78348 528 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 ANKRD40Q6AI12 368 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 GBP3Q9H0R5 595 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 NLRC4Q9NPP4 1024 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 STX8Q9UNK0 236 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 JRKLQ9Y4A0 524 aa13.78□□□□□ -0.2
LDLR-205ENST00000557933 BAZ2AQ9UIF9 1905 aaKnown RBP13.77□□□□□ -0.2
LDLR-205ENST00000557933 LGALS16A8MUM7 142 aa13.77□□□□□ -0.2
LDLR-205ENST00000557933 PRPF3O43395 683 aaKnown RBP13.77□□□□□ -0.2
LDLR-205ENST00000557933 IGHMBP2P38935 993 aaKnown RBP13.77□□□□□ -0.2
LDLR-205ENST00000557933 PDE4DQ08499 809 aa13.77□□□□□ -0.2
LDLR-205ENST00000557933 LETM2Q2VYF4 491 aa13.77□□□□□ -0.2
LDLR-205ENST00000557933 CNOT6LQ96LI5 555 aaKnown RBP13.77□□□□□ -0.2
LDLR-205ENST00000557933 NOC4LQ9BVI4 516 aaKnown RBP13.77□□□□□ -0.2
LDLR-205ENST00000557933 TSPYL1Q9H0U9 437 aa13.77□□□□□ -0.2
LDLR-205ENST00000557933 DEF6Q9H4E7 631 aa13.77□□□□□ -0.2
LDLR-205ENST00000557933 FBXO3Q9UK99 471 aa13.77□□□□□ -0.2
LDLR-205ENST00000557933 SCN7AQ01118 1682 aa13.77□□□□□ -0.2
LDLR-205ENST00000557933 MYH7P12883 1935 aa13.77□□□□□ -0.2
LDLR-205ENST00000557933 KRT86O43790 486 aa13.77□□□□□ -0.21
LDLR-205ENST00000557933 SLC20A2Q08357 652 aa13.77□□□□□ -0.21
LDLR-205ENST00000557933 ADSSL1Q8N142 457 aa13.77□□□□□ -0.21
LDLR-205ENST00000557933 FAM76AQ8TAV0 307 aa13.77□□□□□ -0.21
LDLR-205ENST00000557933 CCDC42Q96M95 316 aa13.77□□□□□ -0.21
LDLR-205ENST00000557933 HAUS4Q9H6D7 363 aa13.77□□□□□ -0.21
LDLR-205ENST00000557933 DISC1Q9NRI5 854 aa13.77□□□□□ -0.21
LDLR-205ENST00000557933 TULP1O00294 542 aaPredicted RBP13.77□□□□□ -0.21
LDLR-205ENST00000557933 HMGB2P26583 209 aaKnown RBP13.77□□□□□ -0.21
LDLR-205ENST00000557933 TMTC2Q8N394 836 aa13.77□□□□□ -0.21
LDLR-205ENST00000557933 TBC1D7Q9P0N9 293 aa13.77□□□□□ -0.21
LDLR-205ENST00000557933 CCDC194A0A1B0GVG4 234 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 PSMD14O00487 310 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 PLCG1P19174 1290 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 MAGEA9P43362 315 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 GFPT1Q06210 699 aaPredicted RBP13.76□□□□□ -0.21
LDLR-205ENST00000557933 CCNI2Q6ZMN8 369 aaPredicted RBP13.76□□□□□ -0.21
LDLR-205ENST00000557933 CCDC51Q96ER9 411 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 RIOK1Q9BRS2 568 aaKnown RBP13.76□□□□□ -0.21
LDLR-205ENST00000557933 TANGO6Q9C0B7 1094 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 ACBD3Q9H3P7 528 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 LAMB2P55268 1798 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 ITIH6Q6UXX5 1313 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 MROH5Q6ZUA9 1318 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 LRRC10BA6NIK2 292 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 TECP42680 631 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 IRAK1P51617 712 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 KIF5AQ12840 1032 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 WDR93Q6P2C0 686 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 DTHD1Q6ZMT9 781 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 SECISBP2LQ93073 1101 aaKnown RBP13.76□□□□□ -0.21
LDLR-205ENST00000557933 DUSP9Q99956 384 aaKnown RBP13.76□□□□□ -0.21
LDLR-205ENST00000557933 IFIH1Q9BYX4 1025 aaKnown RBP13.76□□□□□ -0.21
LDLR-205ENST00000557933 MED4Q9NPJ6 270 aa13.76□□□□□ -0.21
LDLR-205ENST00000557933 ZNHIT6Q9NWK9 470 aaKnown RBP13.76□□□□□ -0.21
LDLR-205ENST00000557933 MCM9Q9NXL9 1143 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms