RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 FGF10O15520 208 aaPredicted RBP8.52□□□□□ -1.05
CCDC39-207ENST00000495817 CD3EP07766 207 aa8.52□□□□□ -1.05
CCDC39-207ENST00000495817 HMGB1P09429 215 aaKnown RBP8.52□□□□□ -1.05
CCDC39-207ENST00000495817 GSTM1P09488 218 aa8.52□□□□□ -1.05
CCDC39-207ENST00000495817 TRHRP34981 398 aaPredicted RBP8.52□□□□□ -1.05
CCDC39-207ENST00000495817 RTP1P59025 263 aa8.52□□□□□ -1.05
CCDC39-207ENST00000495817 PPP2R5DQ14738 602 aa8.52□□□□□ -1.05
CCDC39-207ENST00000495817 TIGD5Q53EQ6 642 aa8.52□□□□□ -1.05
CCDC39-207ENST00000495817 RCSD1Q6JBY9 416 aa8.52□□□□□ -1.05
CCDC39-207ENST00000495817 ZPBP2Q6X784 338 aa8.52□□□□□ -1.05
CCDC39-207ENST00000495817 ZNF513Q8N8E2 541 aaPredicted RBP8.52□□□□□ -1.05
CCDC39-207ENST00000495817 THAP3Q8WTV1 239 aaPredicted RBP8.52□□□□□ -1.05
CCDC39-207ENST00000495817 C19orf44Q9H6X5 657 aa8.52□□□□□ -1.05
CCDC39-207ENST00000495817 GPR55Q9Y2T6 319 aaPredicted RBP8.52□□□□□ -1.05
CCDC39-207ENST00000495817 YBX2Q9Y2T7 364 aaKnown RBP8.52□□□□□ -1.05
CCDC39-207ENST00000495817 TAF6LQ9Y6J9 622 aa8.52□□□□□ -1.05
CCDC39-207ENST00000495817 WTIPA6NIX2 430 aaPredicted RBP8.51□□□□□ -1.05
CCDC39-207ENST00000495817 AMPD2Q01433 879 aa8.51□□□□□ -1.05
CCDC39-207ENST00000495817 C2orf27AQ580R0 203 aa8.51□□□□□ -1.05
CCDC39-207ENST00000495817 PLEKHG4Q58EX7 1191 aa8.51□□□□□ -1.05
CCDC39-207ENST00000495817 EEF1DP3Q658K8 133 aa8.51□□□□□ -1.05
CCDC39-207ENST00000495817 OGFOD2Q6N063 350 aa8.51□□□□□ -1.05
CCDC39-207ENST00000495817 GALNT18Q6P9A2 607 aa8.51□□□□□ -1.05
CCDC39-207ENST00000495817 SLCO6A1Q86UG4 719 aa8.51□□□□□ -1.05
CCDC39-207ENST00000495817 NLRX1Q86UT6 975 aa8.51□□□□□ -1.05
CCDC39-207ENST00000495817 IRF2BP1Q8IU81 584 aa8.51□□□□□ -1.05
CCDC39-207ENST00000495817 BVESQ8NE79 360 aa8.51□□□□□ -1.05
CCDC39-207ENST00000495817 LIN37Q96GY3 246 aaPredicted RBP8.51□□□□□ -1.05
CCDC39-207ENST00000495817 FCRL3Q96P31 734 aaPredicted RBP8.51□□□□□ -1.05
CCDC39-207ENST00000495817 CRTAC1Q9NQ79 661 aa8.51□□□□□ -1.05
CCDC39-207ENST00000495817 APEX2Q9UBZ4 518 aa8.51□□□□□ -1.05
CCDC39-207ENST00000495817 EMC9Q9Y3B6 208 aa8.51□□□□□ -1.05
CCDC39-207ENST00000495817 IQCA1LA6NCM1 817 aa8.5□□□□□ -1.05
CCDC39-207ENST00000495817 NOTOA8MTQ0 251 aa8.5□□□□□ -1.05
CCDC39-207ENST00000495817 NOP56O00567 594 aaKnown RBP8.5□□□□□ -1.05
CCDC39-207ENST00000495817 AURKAO14965 403 aa8.5□□□□□ -1.05
CCDC39-207ENST00000495817 SUSD5O60279 629 aa8.5□□□□□ -1.05
CCDC39-207ENST00000495817 SSRP1Q08945 709 aaKnown RBP8.5□□□□□ -1.05
CCDC39-207ENST00000495817 HLA-DQA1Q5Y7H0 255 aa8.5□□□□□ -1.05
CCDC39-207ENST00000495817 ZNF662Q6ZS27 426 aa8.5□□□□□ -1.05
CCDC39-207ENST00000495817 HOMER1Q86YM7 354 aa8.5□□□□□ -1.05
CCDC39-207ENST00000495817 APPBP2Q92624 585 aa8.5□□□□□ -1.05
CCDC39-207ENST00000495817 TMEM260Q9NX78 707 aa8.5□□□□□ -1.05
CCDC39-207ENST00000495817 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.5□□□□□ -1.05
CCDC39-207ENST00000495817 AKT3Q9Y243 479 aa8.5□□□□□ -1.05
CCDC39-207ENST00000495817 KDM2BQ8NHM5 1336 aa8.5□□□□□ -1.05
CCDC39-207ENST00000495817 PSPNO60542 156 aa8.49□□□□□ -1.05
CCDC39-207ENST00000495817 FARP2O94887 1054 aaPredicted RBP8.49□□□□□ -1.05
CCDC39-207ENST00000495817 TBC1D8O95759 1140 aa8.49□□□□□ -1.05
CCDC39-207ENST00000495817 IFNGR1P15260 489 aa8.49□□□□□ -1.05
CCDC39-207ENST00000495817 LONRF2Q1L5Z9 754 aa8.49□□□□□ -1.05
CCDC39-207ENST00000495817 HSF5Q4G112 596 aaPredicted RBP8.49□□□□□ -1.05
CCDC39-207ENST00000495817 SPATC1Q76KD6 591 aa8.49□□□□□ -1.05
CCDC39-207ENST00000495817 SHISA4Q96DD7 197 aa8.49□□□□□ -1.05
CCDC39-207ENST00000495817 SGSM3Q96HU1 749 aa8.49□□□□□ -1.05
CCDC39-207ENST00000495817 INTS4Q96HW7 963 aaKnown RBP8.49□□□□□ -1.05
CCDC39-207ENST00000495817 BACE2Q9Y5Z0 518 aa8.49□□□□□ -1.05
CCDC39-207ENST00000495817 TRBV23OR9-2A0A075B6M9 112 aa8.48□□□□□ -1.05
CCDC39-207ENST00000495817 DIAPH1O60610 1272 aaKnown RBP8.48□□□□□ -1.05
CCDC39-207ENST00000495817 CDC45O75419 566 aa8.48□□□□□ -1.05
CCDC39-207ENST00000495817 HSP90B1P14625 803 aaKnown RBP8.48□□□□□ -1.05
CCDC39-207ENST00000495817 SLC10A6Q3KNW5 377 aa8.48□□□□□ -1.05
CCDC39-207ENST00000495817 KSR1Q8IVT5 923 aa8.48□□□□□ -1.05
CCDC39-207ENST00000495817 LRRC47Q8N1G4 583 aaKnown RBP8.48□□□□□ -1.05
CCDC39-207ENST00000495817 PTCHD1Q96NR3 888 aa8.48□□□□□ -1.05
CCDC39-207ENST00000495817 KANSL2Q9H9L4 492 aa8.48□□□□□ -1.05
CCDC39-207ENST00000495817 FANCLQ9NW38 375 aa8.48□□□□□ -1.05
CCDC39-207ENST00000495817 PFDN2Q9UHV9 154 aa8.48□□□□□ -1.05
CCDC39-207ENST00000495817 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.48□□□□□ -1.05
CCDC39-207ENST00000495817 STXBP3O00186 592 aa8.47□□□□□ -1.05
CCDC39-207ENST00000495817 CEBPAP49715 358 aaPredicted RBP8.47□□□□□ -1.05
CCDC39-207ENST00000495817 CORO7P57737 925 aa8.47□□□□□ -1.05
CCDC39-207ENST00000495817 SQSTM1Q13501 440 aa8.47□□□□□ -1.05
CCDC39-207ENST00000495817 MLANAQ16655 118 aa8.47□□□□□ -1.05
CCDC39-207ENST00000495817 ZC3H12BQ5HYM0 836 aaKnown RBP8.47□□□□□ -1.05
CCDC39-207ENST00000495817 TRIM59Q8IWR1 403 aa8.47□□□□□ -1.05
CCDC39-207ENST00000495817 BHLHE22Q8NFJ8 381 aaPredicted RBP8.47□□□□□ -1.05
CCDC39-207ENST00000495817 SPATA9Q9BWV2 254 aa8.47□□□□□ -1.05
CCDC39-207ENST00000495817 EPB41L4BQ9H329 900 aa8.47□□□□□ -1.05
CCDC39-207ENST00000495817 ESYT3A0FGR9 886 aa8.46□□□□□ -1.06
CCDC39-207ENST00000495817 AGRPO00253 132 aa8.46□□□□□ -1.06
CCDC39-207ENST00000495817 PNLIPP16233 465 aa8.46□□□□□ -1.06
CCDC39-207ENST00000495817 ARL4AP40617 200 aa8.46□□□□□ -1.06
CCDC39-207ENST00000495817 SEPHS1P49903 392 aa8.46□□□□□ -1.06
CCDC39-207ENST00000495817 LAPTM5Q13571 262 aa8.46□□□□□ -1.06
CCDC39-207ENST00000495817 JAMLQ86YT9 394 aa8.46□□□□□ -1.06
CCDC39-207ENST00000495817 SYNPOQ8N3V7 929 aa8.46□□□□□ -1.06
CCDC39-207ENST00000495817 TMEM52Q8NDY8 209 aa8.46□□□□□ -1.06
CCDC39-207ENST00000495817 TMX1Q9H3N1 280 aa8.46□□□□□ -1.06
CCDC39-207ENST00000495817 ACSL6Q9UKU0 697 aa8.46□□□□□ -1.06
CCDC39-207ENST00000495817 C2orf71A6NGG8 1288 aa8.45□□□□□ -1.06
CCDC39-207ENST00000495817 HRKO00198 91 aa8.45□□□□□ -1.06
CCDC39-207ENST00000495817 KCNH1O95259 989 aa8.45□□□□□ -1.06
CCDC39-207ENST00000495817 SV2CQ496J9 727 aa8.45□□□□□ -1.06
CCDC39-207ENST00000495817 PRR23BQ6ZRT6 265 aa8.45□□□□□ -1.06
CCDC39-207ENST00000495817 KIAA0907Q7Z7F0 614 aaPredicted RBP8.45□□□□□ -1.06
CCDC39-207ENST00000495817 FBXO15Q8NCQ5 510 aaPredicted RBP8.45□□□□□ -1.06
CCDC39-207ENST00000495817 ZSWIM2Q8NEG5 633 aa8.45□□□□□ -1.06
CCDC39-207ENST00000495817 FAM84AQ96KN4 292 aa8.45□□□□□ -1.06
CCDC39-207ENST00000495817 MRGPRX3Q96LB0 322 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms