RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 LRRFIP1Q32MZ4 808 aaKnown RBP5.43□□□□□ -1.54
SCN1A-208ENST00000625916 CRTC3Q6UUV7 619 aa5.43□□□□□ -1.54
SCN1A-208ENST00000625916 TMEM192Q8IY95 271 aa5.43□□□□□ -1.54
SCN1A-208ENST00000625916 NAT16Q8N8M0 369 aa5.43□□□□□ -1.54
SCN1A-208ENST00000625916 DSCC1Q9BVC3 393 aa5.43□□□□□ -1.54
SCN1A-208ENST00000625916 TNFRSF12AQ9NP84 129 aa5.43□□□□□ -1.54
SCN1A-208ENST00000625916 LUC7LQ9NQ29 371 aaKnown RBP5.43□□□□□ -1.54
SCN1A-208ENST00000625916 AP5S1Q9NUS5 200 aa5.43□□□□□ -1.54
SCN1A-208ENST00000625916 IMPACTQ9P2X3 320 aa5.43□□□□□ -1.54
SCN1A-208ENST00000625916 GGT7Q9UJ14 662 aa5.43□□□□□ -1.54
SCN1A-208ENST00000625916 ACSL6Q9UKU0 697 aa5.43□□□□□ -1.54
SCN1A-208ENST00000625916 PCDHA5Q9Y5H7 936 aa5.43□□□□□ -1.54
SCN1A-208ENST00000625916 VAV1P15498 845 aa5.42□□□□□ -1.54
SCN1A-208ENST00000625916 NME1P15531 152 aaKnown RBP5.42□□□□□ -1.54
SCN1A-208ENST00000625916 CTSKP43235 329 aa5.42□□□□□ -1.54
SCN1A-208ENST00000625916 ZNF165P49910 485 aa5.42□□□□□ -1.54
SCN1A-208ENST00000625916 AUHQ13825 339 aaKnown RBP5.42□□□□□ -1.54
SCN1A-208ENST00000625916 RPTNQ6XPR3 784 aa5.42□□□□□ -1.54
SCN1A-208ENST00000625916 REXO1Q8N1G1 1221 aaKnown RBP5.42□□□□□ -1.54
SCN1A-208ENST00000625916 LINC01356Q8N9X3 169 aa5.42□□□□□ -1.54
SCN1A-208ENST00000625916 EAF1Q96JC9 268 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-208ENST00000625916 JMJD8Q96S16 334 aa5.42□□□□□ -1.54
SCN1A-208ENST00000625916 ADAM7Q9H2U9 754 aa5.42□□□□□ -1.54
SCN1A-208ENST00000625916 ANTXR1Q9H6X2 564 aa5.42□□□□□ -1.54
SCN1A-208ENST00000625916 UBP1Q9NZI7 540 aa5.42□□□□□ -1.54
SCN1A-208ENST00000625916 ZC3H12DA2A288 527 aaKnown RBP5.41□□□□□ -1.54
SCN1A-208ENST00000625916 PFKLP17858 780 aa5.41□□□□□ -1.54
SCN1A-208ENST00000625916 CBX2Q14781 532 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-208ENST00000625916 CWF19L1Q69YN2 538 aaKnown RBP5.41□□□□□ -1.54
SCN1A-208ENST00000625916 ZC3H14Q6PJT7 736 aaKnown RBP5.41□□□□□ -1.54
SCN1A-208ENST00000625916 HS2ST1Q7LGA3 356 aa5.41□□□□□ -1.54
SCN1A-208ENST00000625916 JAMLQ86YT9 394 aa5.41□□□□□ -1.54
SCN1A-208ENST00000625916 NLGN1Q8N2Q7 840 aa5.41□□□□□ -1.54
SCN1A-208ENST00000625916 TEPSINQ96N21 525 aa5.41□□□□□ -1.54
SCN1A-208ENST00000625916 A0A1W2PQJ5 194 aa5.4□□□□□ -1.54
SCN1A-208ENST00000625916 FAM86C2PA6NEL3 165 aa5.4□□□□□ -1.54
SCN1A-208ENST00000625916 TNFRSF10CO14798 259 aa5.4□□□□□ -1.54
SCN1A-208ENST00000625916 GSNP06396 782 aa5.4□□□□□ -1.54
SCN1A-208ENST00000625916 GSTM1P09488 218 aa5.4□□□□□ -1.54
SCN1A-208ENST00000625916 LIMS1P48059 325 aa5.4□□□□□ -1.54
SCN1A-208ENST00000625916 ZNF200P98182 395 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-208ENST00000625916 NR1I3Q14994 352 aa5.4□□□□□ -1.54
SCN1A-208ENST00000625916 PLEKHN1Q494U1 663 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-208ENST00000625916 HLA-DQA1Q5Y7H0 255 aa5.4□□□□□ -1.54
SCN1A-208ENST00000625916 CCDC144CPQ8IYA2 1237 aa5.4□□□□□ -1.54
SCN1A-208ENST00000625916 NKD1Q969G9 470 aa5.4□□□□□ -1.54
SCN1A-208ENST00000625916 PRR13Q9NZ81 148 aa5.4□□□□□ -1.54
SCN1A-208ENST00000625916 ADAMTS1Q9UHI8 967 aa5.4□□□□□ -1.54
SCN1A-208ENST00000625916 MEIS3P2A8K0S8 358 aa5.39□□□□□ -1.55
SCN1A-208ENST00000625916 ERCC3P19447 782 aa5.39□□□□□ -1.55
SCN1A-208ENST00000625916 MAPKAPK2P49137 400 aa5.39□□□□□ -1.55
SCN1A-208ENST00000625916 RTP2Q5QGT7 225 aa5.39□□□□□ -1.55
SCN1A-208ENST00000625916 FRMD5Q7Z6J6 570 aa5.39□□□□□ -1.55
SCN1A-208ENST00000625916 C7orf61Q8IZ16 206 aa5.39□□□□□ -1.55
SCN1A-208ENST00000625916 TMEM52Q8NDY8 209 aa5.39□□□□□ -1.55
SCN1A-208ENST00000625916 DHRS1Q96LJ7 313 aa5.39□□□□□ -1.55
SCN1A-208ENST00000625916 SLC9A7Q96T83 725 aa5.39□□□□□ -1.55
SCN1A-208ENST00000625916 SUCOQ9UBS9 1254 aaKnown RBP5.39□□□□□ -1.55
SCN1A-208ENST00000625916 ADRB1P08588 477 aa5.38□□□□□ -1.55
SCN1A-208ENST00000625916 PDIA4P13667 645 aaKnown RBP5.38□□□□□ -1.55
SCN1A-208ENST00000625916 KCNC1P48547 511 aa5.38□□□□□ -1.55
SCN1A-208ENST00000625916 CEBPAP49715 358 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-208ENST00000625916 MVKQ03426 396 aa5.38□□□□□ -1.55
SCN1A-208ENST00000625916 PLP2Q04941 152 aa5.38□□□□□ -1.55
SCN1A-208ENST00000625916 TARBP2Q15633 366 aaKnown RBP5.38□□□□□ -1.55
SCN1A-208ENST00000625916 BICRALQ6AI39 1079 aa5.38□□□□□ -1.55
SCN1A-208ENST00000625916 TP53I13Q8NBR0 393 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-208ENST00000625916 BORCS6Q96GS4 357 aa5.38□□□□□ -1.55
SCN1A-208ENST00000625916 BDH2Q9BUT1 245 aa5.38□□□□□ -1.55
SCN1A-208ENST00000625916 FFAR3O14843 346 aa5.37□□□□□ -1.55
SCN1A-208ENST00000625916 MSL3P1P0C860 447 aa5.37□□□□□ -1.55
SCN1A-208ENST00000625916 NFKB2Q00653 900 aa5.37□□□□□ -1.55
SCN1A-208ENST00000625916 NOL9Q5SY16 702 aaKnown RBP5.37□□□□□ -1.55
SCN1A-208ENST00000625916 PAQR3Q6TCH7 311 aa5.37□□□□□ -1.55
SCN1A-208ENST00000625916 NT5C1AQ9BXI3 368 aa5.37□□□□□ -1.55
SCN1A-208ENST00000625916 SLC12A9Q9BXP2 914 aa5.37□□□□□ -1.55
SCN1A-208ENST00000625916 BCL11AQ9H165 835 aa5.37□□□□□ -1.55
SCN1A-208ENST00000625916 IRS2Q9Y4H2 1338 aa5.37□□□□□ -1.55
SCN1A-208ENST00000625916 C9IYK1 514 aa5.36□□□□□ -1.55
SCN1A-208ENST00000625916 H0Y8X5 98 aa5.36□□□□□ -1.55
SCN1A-208ENST00000625916 CYBBP04839 570 aa5.36□□□□□ -1.55
SCN1A-208ENST00000625916 DBHP09172 617 aa5.36□□□□□ -1.55
SCN1A-208ENST00000625916 IGFBP6P24592 240 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-208ENST00000625916 NOP2P46087 812 aaKnown RBP5.36□□□□□ -1.55
SCN1A-208ENST00000625916 SLURP1P55000 103 aa5.36□□□□□ -1.55
SCN1A-208ENST00000625916 KRTAP10-2P60368 255 aa5.36□□□□□ -1.55
SCN1A-208ENST00000625916 CCDC27Q2M243 656 aa5.36□□□□□ -1.55
SCN1A-208ENST00000625916 TDRD10Q5VZ19 366 aaKnown RBP5.36□□□□□ -1.55
SCN1A-208ENST00000625916 CYP2R1Q6VVX0 501 aa5.36□□□□□ -1.55
SCN1A-208ENST00000625916 GGNQ86UU5 652 aa5.36□□□□□ -1.55
SCN1A-208ENST00000625916 LSRQ86X29 649 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-208ENST00000625916 SLITRK4Q8IW52 837 aa5.36□□□□□ -1.55
SCN1A-208ENST00000625916 RGS22Q8NE09 1264 aa5.36□□□□□ -1.55
SCN1A-208ENST00000625916 USP40Q9NVE5 1235 aa5.36□□□□□ -1.55
SCN1A-208ENST00000625916 SUSD2Q9UGT4 822 aa5.36□□□□□ -1.55
SCN1A-208ENST00000625916 DBR1Q9UK59 544 aaKnown RBP5.36□□□□□ -1.55
SCN1A-208ENST00000625916 FAN1Q9Y2M0 1017 aa5.36□□□□□ -1.55
SCN1A-208ENST00000625916 F8W031 263 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-208ENST00000625916 SHOXO15266 292 aa5.35□□□□□ -1.55
SCN1A-208ENST00000625916 PMS1P54277 932 aaKnown RBP5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms